This repository is an exploratory resource to accelerate opensource analysis of CosMx™ Spatial Molecular Imager (SMI) data. Contained here are and writeups and vignettes addressing a variety of top…

Install script for YNAB 4 on Linux

Probabilistic cell segmentation for in situ spatial transcriptomics

📠 Pretty and fast csv viewer for cli with cjk/emoji support.

A code formatter for Julia with rules set in stone.

Syntax highlighting and other enhancements for the Julia REPL

Podcast website

Orchestrating Microbiome Analysis

Image Organizer app that uses the Webix Toolkit to interact with a Girder server

Convert diffs and patch queues into fake vim-alike sessions for asciinema recordings

Snakemake workflow for scoring and comparing multiple bacterial genome assemblies (Illumina, Nanopore) to reference genome(s).

A handy shell script that enables you to write repeatable demos in a bash environment.

The official deployment of the Digital Slide Archive and HistomicsTK.

Source code for microbiome pipeline benchmark

[WIP] Workflow software in julia

Touying is a powerful package for creating presentation slides in Typst.

Fast composable IO streams

A Julia package to read, write and manipulate macromolecular structures

CeTZ: ein Typst Zeichenpaket - A library for drawing stuff with Typst.

Open-Source Form Builder

A package for creating slides in Typst

Relax! Flux is the ML library that doesn't make you tensor

DocumenterCitations.jl uses Bibliography.jl to add support for BibTeX citations and references in documentation pages generated by Documenter.jl.

Geometric Deep Learning for Flux

The Leek group guide to data sharing

wrap text around Typst figures and content

A file explorer tree for neovim written in lua

Zotero plugin to manage your attachments: automatically rename, move, and attach PDFs (or other files) to Zotero items, sync PDFs from your Zotero library to your (mobile) PDF reader (e.g. an iPad,…

sixel-tmux is a fork of tmux, with just one goal: having the most reliable support of graphics