List of pathology feature extractors and foundation models

Search git commit messages by semantic similarity with embeddings from sentence-transformers

Public release of PRINCE trial data

Interactive design and validation of antibody panels using single-cell atlases

Stain normalization tools for histological analysis and computational pathology

SPatialomics Enhanced Research Suite

Deep Generative Modeling of RNA Velocity

Towards a general-purpose foundation model for computational pathology - Nature Medicine

Segmentation error aware clustering for multiplexed imaging

Open source tools for computational pathology - Nature BME

Benchmarking study of machine learning methods for prediction of synthetic lethality

Defense Against the Dark Arts

Online Materials: Somatic Mutations, Neoepitope Homology and Inflammation in Melanomas Treated with CTLA-4 Blockade

Science Parse parses scientific papers (in PDF form) and returns them in structured form.

React components to build charts and dashboards

Fine-tune SAM (Segment Anything Model) for computer vision tasks such as semantic segmentation, matting, detection ... in specific scenarios

Collection of Tumor-Infiltrating Lymphocyte Single-Cell Experiments with TCR

Python PDF parser for scientific publications: content and figures

🐙 Guides, papers, lecture, notebooks and resources for prompt engineering

Evolutionary Scale Modeling (esm): Pretrained language models for proteins

An experimental and unofficial wrapper for interacting with OpenAI GPT models in R.

A library of free open source icons for science illustrations in biology and chemistry

R package for pre-processing of mass and flow cytometry data

Cytofin-an R package for CyTOF data integration

Haplotype-aware CNV analysis from single-cell RNA-seq