code for reading and processing Allen Institute for Brain Science data

STRFPAK! A tool for fitting spatio-temporal receptive fields.

Neuroscience

Listed is the code required to create a convolutional neural network to predict visual cortex neuron response to specific visual stimuli

Code for receptive field reconstruction from visual neurons using white-noise analysis

Local Receptive Fields Based Extreme Learning Machine

Entropy Based Sampling and Parallel CoT Decoding

A version of the R2Drive for Neuropixels 2.0 probes with the dovetail cap

Automated 3D cell detection in very large images

3D Print design files for recoverable, chronic mouse/rat surgeries using the Neuropixel 2.0 with a dovetail attachment. Adapted from Juavinett, A. L., Bekheet, G., Churchland, A. K. (2018) 3D desig…

A curated list of awesome Neuropixels resources.

Neural encoding of stimuli into spike trains via generalized linear models and decoding of spike trains into stimuli via Bayesian optimization. Code used in paper "Statistical Analysis of Decoding …

Naive Bayesian decoder for decoding an animal's position from hippocampal multi-unit pyramidal cell activity. Decodes current position during running, and infers replayed activity during hyperexcit…

Code Repository for "Neural Networks for Efficient Bayesian Decoding of Natural Images from Retinal Neurons" by Nikhil Parthasarathy, Eleanor Batty, William Falcon, Thomas Rutten, Mohit Rajpal, E.J…

This repository includes a MATLAB demo for the paper "Real-Time Decoding of Auditory Attention from EEG via Bayesian Filtering". The code reproduces the results of Figure 3 in the paper. In order t…

This project is based on Python and Arduino code for Unihiker.

CircuitPython - a Python implementation for teaching coding with microcontrollers

Neuropixels trajectory explorer with the Allen CCF mouse atlas

GUI for spikeinterface objects

Generate IMRO tables and channels maps for Neuropixels probes.

Repository of standard .prb files for different manufacturers.

Uses Kilosort to sort Plexon (.plx and .pl2) files

Neuroscope:An Explainable AI Toolbox for Semantic Segmentation and Image Classification of Convolutional Neural Nets

Recordings with a laminar electrode (e.g., NeuroNexus probes; http://neuronexus.com).

Matlab functions for Neuronexus probe mapping and processing binary files with electrophysiological recording data

database of NeuroNexus probe files from NiPOD database

Python package to handle probe layout, geometry and wiring to device.

EIB for Neuronexus probes with "A64" connector

Software for processing, recording, and visualizing multichannel electrophysiology data