Name	Name	Last commit message	Last commit date
Latest commit Brian Knaus and Brian Knaus rebuilt site Jan 18, 2023 388b438 · Jan 18, 2023 History 106 Commits
chromR_object_files/figure-html	chromR_object_files/figure-html	rebuilt site	Jan 18, 2023
depth_plot_files/figure-html	depth_plot_files/figure-html	rebuilt site	Jan 18, 2023
determining_ploidy_1_files/figure-html	determining_ploidy_1_files/figure-html	rebuilt site	Jan 18, 2023
determining_ploidy_2_files/figure-html	determining_ploidy_2_files/figure-html	rebuilt site	Jan 18, 2023
dnabin_files/figure-html	dnabin_files/figure-html	rebuilt site	Jan 18, 2023
filtering_data_files/figure-html	filtering_data_files/figure-html	rebuilt site	Jan 18, 2023
genetic_differentiation_files/figure-html	genetic_differentiation_files/figure-html	rebuilt site	Jan 18, 2023
how_much_memory_files/figure-html	how_much_memory_files/figure-html	rebuilt site	Jan 18, 2023
missing_data_files/figure-html	missing_data_files/figure-html	rebuilt site	Jan 18, 2023
omitting_data_files/figure-html	omitting_data_files/figure-html	rebuilt site	Jan 18, 2023
quality_filtering_files/figure-html	quality_filtering_files/figure-html	rebuilt site	Jan 18, 2023
quick_intro_files/figure-html	quick_intro_files/figure-html	rebuilt site	Jan 18, 2023
ranking_data_files/figure-html	ranking_data_files/figure-html	rebuilt site	Jan 18, 2023
sequence_coverage_files/figure-html	sequence_coverage_files/figure-html	rebuilt site	Jan 18, 2023
site_libs	site_libs	rebuilt site	Jan 18, 2023
vcf_data_files/figure-html	vcf_data_files/figure-html	rebuilt site	Jan 18, 2023
visualization_1_files/figure-html	visualization_1_files/figure-html	rebuilt site	Jan 18, 2023
visualization_2_files/figure-html	visualization_2_files/figure-html	rebuilt site	Jan 18, 2023
.gitignore	.gitignore	added site files	Dec 13, 2016
Makefile	Makefile	added files	Dec 15, 2016
README.html	README.html	incremented year in footer	Jun 18, 2018
README.md	README.md	Update README.md	Dec 15, 2016
Supercontig_1.10.vcf.gz	Supercontig_1.10.vcf.gz	rebuilt site	Jan 18, 2023
Supercontig_1.5.vcf.gz	Supercontig_1.5.vcf.gz	rebuilt site	Jan 18, 2023
Supercontig_1.50.vcf.gz	Supercontig_1.50.vcf.gz	rebuilt site	Jan 18, 2023
TASSEL_GBS0077.vcf.gz	TASSEL_GBS0077.vcf.gz	updated quality_filtering.Rmd	Jan 20, 2017
_site.yml	_site.yml	added missing_data to dropdown menu	Jan 18, 2023
apply.Rmd	apply.Rmd	created apply.Rmd	Jan 2, 2017
apply.html	apply.html	rebuilt site	Jan 18, 2023
censoring_data.Rmd	censoring_data.Rmd	updated docs	Jan 22, 2017
censoring_data.html	censoring_data.html	rebuilt site	Jan 18, 2023
chromR_object.Rmd	chromR_object.Rmd	updated chromR_object	Jan 29, 2017
chromR_object.html	chromR_object.html	rebuilt site	Jan 18, 2023
compiling_vcfR.Rmd	compiling_vcfR.Rmd	updated compiling_vcfR.Rmd	Apr 19, 2017
compiling_vcfR.html	compiling_vcfR.html	rebuilt site	Jan 18, 2023
depth_plot.Rmd	depth_plot.Rmd	updated depth_plot.html	Jan 30, 2017
depth_plot.html	depth_plot.html	rebuilt site	Jan 18, 2023
determining_ploidy_1.Rmd	determining_ploidy_1.Rmd	added triploid example to determining ploidy 2	Jan 26, 2017
determining_ploidy_1.html	determining_ploidy_1.html	rebuilt site	Jan 18, 2023
determining_ploidy_2.Rmd	determining_ploidy_2.Rmd	removed formatting from determining_ploidy_2	Feb 14, 2017
determining_ploidy_2.html	determining_ploidy_2.html	rebuilt site	Jan 18, 2023
dip_to_hap.Rmd	dip_to_hap.Rmd	added dip_to_hap.Rmd	Mar 11, 2017
dip_to_hap.html	dip_to_hap.html	rebuilt site	Jan 18, 2023
dnabin.Rmd	dnabin.Rmd	updated dnabin.Rmd	Jan 30, 2017
dnabin.html	dnabin.html	rebuilt site	Jan 18, 2023
export.Rmd	export.Rmd	updated export sections	Jan 30, 2017
export.html	export.html	rebuilt site	Jan 18, 2023
export_genind_genclone.Rmd	export_genind_genclone.Rmd	updated export sections	Jan 30, 2017
export_genind_genclone.html	export_genind_genclone.html	rebuilt site	Jan 18, 2023
export_genlight_snpclone.Rmd	export_genlight_snpclone.Rmd	updated export sections	Jan 30, 2017
export_genlight_snpclone.html	export_genlight_snpclone.html	rebuilt site	Jan 18, 2023
export_vcfgz.Rmd	export_vcfgz.Rmd	updated export sections	Jan 30, 2017
export_vcfgz.html	export_vcfgz.html	rebuilt site	Jan 18, 2023
extract_data.Rmd	extract_data.Rmd	created extract_data and depth plot	Jan 20, 2017
extract_data.html	extract_data.html	rebuilt site	Jan 18, 2023
filtering_data.Rmd	filtering_data.Rmd	edited yaml	Sep 18, 2017
filtering_data.html	filtering_data.html	rebuilt site	Jan 18, 2023
footer.html	footer.html	incremented year in footer	Jun 18, 2018
gbs_class.Rmd	gbs_class.Rmd	updated gbs_class	Jan 23, 2017
gbs_class.html	gbs_class.html	rebuilt site	Jan 18, 2023
genetic_differentiation.Rmd	genetic_differentiation.Rmd	caught typos in genetic_differentiation.Rmd	May 21, 2017
genetic_differentiation.html	genetic_differentiation.html	rebuilt site	Jan 18, 2023
googlecode.html	googlecode.html	added extra analytics tag	Oct 3, 2017
header.html	header.html	created googlecode.html	Sep 27, 2017
how_much_memory.Rmd	how_much_memory.Rmd	updated how_much_memory.Rmd	Jun 12, 2017
how_much_memory.html	how_much_memory.html	rebuilt site	Jan 18, 2023
index.Rmd	index.Rmd	added pub to index.Rmd	Jan 30, 2017
index.html	index.html	added missing_data to dropdown menu	Jan 18, 2023
matrices.Rmd	matrices.Rmd	updated matrices.Rmd	Dec 20, 2016
matrices.html	matrices.html	rebuilt site	Jan 18, 2023
missing_data.Rmd	missing_data.Rmd	updated depth_plot and missing_data	Feb 10, 2017
missing_data.html	missing_data.html	rebuilt site	Jan 18, 2023
omitting_data.Rmd	omitting_data.Rmd	updated omitting data	Apr 13, 2017
omitting_data.html	omitting_data.html	rebuilt site	Jan 18, 2023
pinf_ref_vars.csv	pinf_ref_vars.csv	rebuilt site	Jan 18, 2023
pinf_ref_wins.csv	pinf_ref_wins.csv	rebuilt site	Jan 18, 2023
ploidy.Rmd	ploidy.Rmd	created ploidy section	Jan 25, 2017
ploidy.html	ploidy.html	rebuilt site	Jan 18, 2023
quality_filtering.Rmd	quality_filtering.Rmd	updated index	Jan 20, 2017
quality_filtering.html	quality_filtering.html	rebuilt site	Jan 18, 2023
quick_intro.Rmd	quick_intro.Rmd	caught typo in quick_intro.Rmd	Feb 27, 2017
quick_intro.html	quick_intro.html	rebuilt site	Jan 18, 2023
ranking_data.Rmd	ranking_data.Rmd	edited yaml	Sep 18, 2017
ranking_data.html	ranking_data.html	rebuilt site	Jan 18, 2023
reporting_issue.Rmd	reporting_issue.Rmd	creating reporting_issue.Rmd	May 13, 2017
reporting_issue.html	reporting_issue.html	rebuilt site	Jan 18, 2023
rlanguage.Rmd	rlanguage.Rmd	created gbs_class.Rmd	Dec 31, 2016
rlanguage.html	rlanguage.html	rebuilt site	Jan 18, 2023
sequence_coverage.Rmd	sequence_coverage.Rmd	added font size and median diamonds to sequence_coverage	Oct 30, 2018
sequence_coverage.html	sequence_coverage.html	rebuilt site	Jan 18, 2023
styles.css	styles.css	added export	Dec 14, 2016
subset_data_to_1chrom.Rmd	subset_data_to_1chrom.Rmd	added files	Dec 15, 2016
subset_data_to_1chrom.html	subset_data_to_1chrom.html	rebuilt site	Jan 18, 2023
tidy_vcfR.Rmd	tidy_vcfR.Rmd	updated tidy_vcfR.Rmd	Jan 30, 2017
tidy_vcfR.html	tidy_vcfR.html	rebuilt site	Jan 18, 2023
vcfR_documentation.Rproj	vcfR_documentation.Rproj	updated matrices.Rmd	Dec 20, 2016
vcfR_documentation.bib	vcfR_documentation.bib	created genetic_differentiation.Rmd	May 19, 2017
vcfR_object.Rmd	vcfR_object.Rmd	updated omitting data	Apr 13, 2017
vcfR_object.html	vcfR_object.html	rebuilt site	Jan 18, 2023
vcf_data.Rmd	vcf_data.Rmd	updated VCF cartoon in vcf_data.Rmd	May 9, 2018
vcf_data.html	vcf_data.html	rebuilt site	Jan 18, 2023
vcf_software.Rmd	vcf_software.Rmd	added VEP to vcf_software	Feb 19, 2018
vcf_software.html	vcf_software.html	rebuilt site	Jan 18, 2023
visualization_1.Rmd	visualization_1.Rmd	edited yaml	Sep 18, 2017
visualization_1.html	visualization_1.html	rebuilt site	Jan 18, 2023
visualization_2.Rmd	visualization_2.Rmd	edited yaml	Sep 18, 2017
visualization_2.html	visualization_2.html	rebuilt site	Jan 18, 2023
windowing.Rmd	windowing.Rmd	added windowing.Rmd	Jun 29, 2017
windowing.html	windowing.html	rebuilt site	Jan 18, 2023

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