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Commits on Aug 31, 2022

• Add requests timeouts to deal with flaky MSA server

  milot-mirdita

  committed
  c836957

Commits on Aug 19, 2022

• write random_seed info in config.json

  YoshitakaMo

  committed
  a2b37cc

Commits on Aug 16, 2022

• fix format error

  YoshitakaMo

  committed
  2ffb793

• add '--max-msa 16:32'

  YoshitakaMo

  committed
  4079b01

Commits on Aug 11, 2022

• Fix text output that disappeared (thanks NickEdmunds in Discord)

  Show description for 5c15466
  milot-mirdita

  committed
  5c15466

Commits on Jul 14, 2022

• Fix sokrypton#269 call mk_mock_template if hhsearch removed all hits

  milot-mirdita

  committed
  26de12d

Commits on Jul 13, 2022

• Reduce default threads to 32

  martin-steinegger

  authored
  61c95fd

Commits on Jun 16, 2022

• Fix float32 issue

  martin-steinegger

  committed
  6b5e5c0

• Do not allow —max-msa in multimer, add iptm to json and log

  martin-steinegger

  committed
  1e987fe

Commits on Jun 15, 2022

• Merge pull request sokrypton#241 from martin-steinegger/main

  Show description for 5f0cd94
  martin-steinegger

  authored
  5f0cd94

Commits on Jun 14, 2022

• Update MSA notice to highlight colabfold_search

  milot-mirdita

  committed
  2f32e4f

• Change default API and template server to api.colabfold.com in colabfold.py

  Show description for e19fdf9
  milot-mirdita

  committed
  e19fdf9

• custom pdb templates should work now

  milot-mirdita

  committed
  edc6562

Commits on Jun 13, 2022

• Fix recycle issue for fast compile af2

  martin-steinegger

  committed
  0848b53

• Fix msa_max issue

  martin-steinegger

  committed
  c03e440

• Add max_msa support

  martin-steinegger

  committed
  021dfca

• Fix test and run black

  martin-steinegger

  committed
  73b94b8

Commits on Jun 8, 2022

• fixing hardcoded dpi for plot_plddts

  sokrypton

  authored
  60caa02

• adding option to update dpi

  sokrypton

  authored
  ee432b9

• changing to always print ptmscore (if complex or ptm model is used)

  sokrypton

  authored
  9764afc

Commits on May 31, 2022

• Update citations.py

  martin-steinegger

  authored
  fafa47b

Commits on May 13, 2022

• Forgot black

  milot-mirdita

  committed
  03b9a6a

• Expose --random-seed in colabfold_batch (sokrypton#227)

  milot-mirdita

  committed
  a4dd6b8

Commits on May 11, 2022

• Monkey-patch openmm.app.Topology.createDisulfideBonds instead of calling patch inside OpenMM

  milot-mirdita

  committed
  b5b429f

• Speedup CLI first message shown a lot by not loading some imports at runtime and delaying others

  milot-mirdita

  committed
  525b81c

• Log amber relaxation times

  milot-mirdita

  committed
  ad14388

• Include stereo_chemical_props.txt directly into the code base

  milot-mirdita

  committed
  136bec6

Commits on May 9, 2022

• Fix hhsearch database not being built

  milot-mirdita

  committed
  d09cdfa

Commits on May 8, 2022

• Fix wrong file passed to validate_and_fix_mmcif

  milot-mirdita

  committed
  00d2977

• Display relaxed structures during prediction too

  milot-mirdita

  committed
  3e33a92

• Save structures during predictions

  milot-mirdita

  committed
  5ba29fb

• Add link to original source for CFMMCIFIO

  milot-mirdita

  committed
  b287415

• Make it clearer which code was copied from Bio.PDB.MMCIFIO

  milot-mirdita

  committed
  14907c0

• Fix missing revision_date in .cif files for custom templates

  milot-mirdita

  committed
  f692d67

• Add test for mmcif parser and minor style fixes

  

  konstin

  authored and

  milot-mirdita

  committed
  08c3074

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