update rtd config (#296)

bump version: 1.0.0-dev.6 -> 1.0.0

[pre-commit.ci] pre-commit autoupdate

updates:
- [github.com/asottile/reorder_python_imports: v3.8.1 → v3.8.2](asottile/reorder-python-imports@v3.8.1...v3.8.2)
- [github.com/asottile/pyupgrade: v2.37.1 → v2.37.3](asottile/pyupgrade@v2.37.1...v2.37.3)

Update docs (consistent notation + reorganize) (#160)

* Rename all beta to alpha (restart parameters), need minor version bump

* Rename P with W_D in the docs

* Modify emd eqn to illustrate that it is a loss

* Fix notation, only use |.| for cardinality

* Fix linewidth

* Maintenence update

* Reorganize methods and guidlines sections

* Minor format fixes

Change figure size; make emphasis; change caption to text

* Add figure captions for the case study

Add explicit links to doc (#137)

Add more support (#118)

* Add test supporting from Python 3.6 to 3.10

* Add python version and pypi badge

* Disable download warning in test raise

* Minor edit

* Add metadata

* Minor fix

* Only set COLUMNS env var in CLI

* Remove unused imports

Fix setup.cfg typo

Docs and custom module

Swith to JSON

Introduces GenePlexus command line interface