Fitting PD using the linear relationship between PD and another image.

Code for magnetic susceptibility source separation

Water-fat(-silicone) separation with hierarchical multi-resolution graph-cuts

Repository of MATLAB-based code to correct for tilted slices from oblique acquisition in the QSM pipeline.

Compute qMRI spatial change along main subcortical ROI axes

MRI brain extraction tool

MRI reconstruction (e.g., QSM) using deep learning methods

List of deep learning-based quantitative susceptibility mapping (QSM) with source code and data

improved susceptibility weighted imaging using multi-echo aquisitions

BIDScoin converts your source-level neuroimaging data to BIDS

Example codes and data for VFA-EPTI work

Source code to train and test myelin water imaging network (ANN-MWI) (.py), and data preprocessing (.m)

Executables for ROMEO unwrapping for Linux, Windows and Mac OSX

Source code for deep neural network trained quantitative susceptibility mapping (QSMnet and QSMnet+)

Code to simulate mcDESPOT parameter estimation and investigate search-space degeneracy. Key scripts: search-space sampling is performed using "mcDESPOT_SP.m" and Monte Carlo simulations are perform…

Implementation of vnet in tensorflow for medical image segmentation

Algorithms for single-orientation QSM reconstruction

Gradient Unwarping in Python

Microstructure Diffusion Toolbox

Accelerated Microstructure Imaging via Convex Optimization (AMICO) from diffusion MRI data

Quantitative MRI Made Easy with qMRLab: MRI software for data Simulation, analysis and visualization

Microscopic diffusion anisotropy imaging made easy!

Multi Exponential Relaxation Analysis toolbox for MATLAB

Matlab implementation of Marchenko Pastur denoising (Veraart et al, NeuroImage 142 (2016) 394–406)