JNI wrapper for PGEN

**Under development** HTTP/S FileSystem provider for Java NIO.2

Markdown-based documentation website - IGV desktop application

Calculates dependencies for a Gradle build-target and submits the list to the Dependency Submission API

CoffeeCatch, a tiny native POSIX signal catcher (especially useful for JNI code on Android/Dalvik)

Autogenerated WDLs for GATK Tools

CLI for interacting with Cromwell servers

Scalable reporting of Cromwell task call resource monitoring data to BigQuery

Microsoft Genomics Library contains highly optimized compute cores for genomics applications

🐣 zsh plugin to cache eval loads to improve shell startup time

PLINK is a free, open-source whole genome association analysis toolset, designed to perform a range of basic, large-scale analyses in a computationally efficient manner. This is a comprehensive upd…

Examples of how to use cromwell to run ML model at scale

Reference server implementation for the GA4GH HTSget API standard.

A command-line tool for executing, managing, and querying WDL workflows on Cromwell servers.

Utility workflows for the DSP hydro.gen team (formerly palantir)

🍺 The missing package manager for macOS (or Linux)

Official code repository for GATK versions 4 and up

A read extraction and realignment tool for next generation sequencing data

🗺 MapSCII is a Braille & ASCII world map renderer for your console - enter => telnet mapscii.me <= on Mac (brew install telnet) and Linux, connect with PuTTY on Windows

GRIDSS: the Genomic Rearrangement IDentification Software Suite

UNITY is a workflow benchmarking platform used for developing and comparing pipelines.

A brew tap for tools and formula that DSP uses that aren't ready for publishing to homebrew-core

TestNG DataProvider on steroids

CircleCI comments on github

Gradle plugin to use the error-prone compiler for Java

A library for manipulating bioinformatics sequencing formats in Apache Spark

A node.js implementation of https://github.com/jirutka/maven-badges, originally created in ruby.

High-level API for storing and querying sequence variant data

Sparse Project VCF: evolution of VCF to encode population genotype matrices efficiently