Basic Overview

Natural Language Processing tasks focused on Biological domain available from a RESTful API:

• /drugs : retrieves the drugs in a text, along with their Anatomical Therapeutic Chemical Classification (ATC) code

Web Page

Available at: https://librairy.github.io/bio-nlp/

Natural Language Processing API

Available at: http://librairy.linkeddata.es/bio-nlp

This is an example of a CURL query:

curl -d '{"text":"however, clinical trials investigating the efficacy of several agents, including remdesivir and chloroquine, are underway in China"}' -H "Content-Type: application/json" -X POST https://librairy.linkeddata.es/bio-nlp/drugs

And the answer is:

[{
	"name": "remdesivir",
	"atc_parent": "J05AB"
}, {
	"name": "chloroquine",
	"atc_code": "P01BA01",
	"atc_parent": "P01BA",
	"cui": "C0008269",
	"level": 5
}]

Biomedical Literature API

Available at: http://librairy.linkeddata.es/bio-api

Some examples:

Most frequent drugs..

• ..used in the experiments: https://librairy.linkeddata.es/bio-api/drugs
• ..grouped by therapeutic group (ATC-4): https://librairy.linkeddata.es/bio-api/drugs?level=4
• ..considered together with lopinavir: https://librairy.linkeddata.es/bio-api/drugs?keywords=lopinavir
• ..used as viral vaccines: https://librairy.linkeddata.es/bio-api/drugs?keywords=viral%20vaccines&level=5
• ..used to handle fever: https://librairy.linkeddata.es/bio-api/drugs?keywords=fever&level=5

Most frequent diseases..

• ..considered in the corpus: https://librairy.linkeddata.es/bio-api/diseases
• ..grouped by symptoms : https://librairy.linkeddata.es/bio-api/diseases?level=2
• .. treated by chloroquine: https://librairy.linkeddata.es/bio-api/diseases?keywords=chloroquine
• ..appearing along with hallucination: https://librairy.linkeddata.es/bio-api/diseases?keywords=hallucination

Texts about...

• About covid-19 and inflammation difficulties: https://librairy.linkeddata.es/bio-api/texts?keywords=covid19,inflammation
• About hydroxychloroquine: https://librairy.linkeddata.es/bio-api/texts?keywordshydroxychloroquine