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GWAS

Example usage

Read more about parameters here

Example run using VCF files as input:

nextflow run main.nf \
  --grm_plink_input "s3://lifebit-featured-datasets/projects/gel/gel-gwas/testdata/sampleA.{bed,bim,fam}" \
  --pheno_data "s3://lifebit-featured-datasets/projects/gel/cb_binary_pheno.phe" \
  --trait_type "binary" \
  --genotype_files_list "s3://lifebit-featured-datasets/projects/gel/gel-gwas/testdata/vcfs.csv" \