Plant Pkinase family HMMs

README.md

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+# Plant\_Pkinase\_fam.hmm
+
+This HMM file and the FASTA files for building the HMMs in this repository are the Appendix S4 from the article: Lehti-Shiu MD, Shiu SH. [Diversity, classification and function of the plant protein kinase superfamily](http://rstb.royalsocietypublishing.org/content/367/1602/2619). Philos Trans R Soc Lond B Biol Sci. 2012;367:2619-2639.
+
+The files can also be downloaded from [here](http://rstb.royalsocietypublishing.org/highwire/filestream/28555/field_highwire_adjunct_files/0/rstb-2012-0003-File005.zip).

_alignments/AGC-Pl.fa

@@ -0,0 +1,16 @@
+>AT3G08730.1|134-389
+FEVMKVVGKGAFGKVYQVRKKETSEIYAMKVMRKDHIMEKNHAEYMKAERDILTKIDHPFIVQLKYSFQTKYRLYLVLDFINGGHLFFQLYHQGLFREDLARVYTAEIVSAVSHLHEKGIMHRDLKPENILMDTDGHVMLTDFGLAKEFEENTRSNSMCGTTEYMAPEIVRGKGHDKAADWWSVGILLYEMLTGKPPFLGSKGKIQQKIVKDKIKLPQFLSNEAHAILKGLLQKEPERRLGSGLSGAEEIKQHKWF
+>AT3G08720.1|140-395
+FEVLKVVGQGAFGKVYQVRKKDTSEIYAMKVMRKDKIVEKNHAEYMKAERDILTKIDHPFIVQLKYSFQTKYRLYLVLDFINGGHLFFQLYHQGLFREDLARVYTAEIVSAVSHLHEKGIMHRDLKPENILMDVDGHVMLTDFGLAKEFEENTRSNSMCGTTEYMAPEIVRGKGHDKAADWWSVGILLYEMLTGKPPFLGSKGKIQQKIVKDKIKLPQFLSNEAHALLKGLLQKEPERRLGSGPSGAEEIKKHKWF
+>Os03g21620.1|151-407
+FEVLKLVGQGAFGKVFQVRKKGTSEIYAMKVMRKDKILEKNHAEYMKAERDILTKVDHPFVVQLRYSFQTKYRLYLVLDFINGGHLFFQLYQQGLFREELARIYTAEIVSAVAHLHANGIMHRDLKPENILLDADGHAMLTDFGLAKEFDENTRSNSMCGTVEYMAPEIVQGRGHDKAADWWSVGILLFEMLTGKPPFVGGNRDKVQQKIVKEKIKLPAYLSSEVHSLLKGLLHKEAGRRLGCGPGGSNEIKNHKWF
+>Pp1s4_386V6.1|176-432
+FELLRVVGQGAFGKVFQVQKKGTSEIYAMKVMRKEKIIERNHGDYMKAERDILTKVVHPFIVQLQYSFQTQSKLYLVLDFINGGHLFFQLYRQGTFNEDLARMYTAEIVLAVAHLHKNGIIHRDLKPENILLDGDGYVMLTDFGLAKEVKEDSHSNSLCGTMEYMAPEIILSKGHGKPADWWSVGILLYEMLTGQPPFAHKNKQKLQQKIIKDKIKLPTYLTADANNLLKGLLQKDPSKRLGNGPTGSEDIKQNKWF
+>Os07g48290.1|148-410
+FEILKLVGQGAFGKVFQVRKKGTSEIYAMKVMRKDKILEKNHAEYMKAERDILTKVDHPFVVQLRYSFQTKYRLYLVLDFINGGHLFFQLYKQGLFREELARIYTAEIVSAVAHLHDNGIMHRDLKPENILLDADGHAMLTDFGLAKEFNENTRSNSMCGTVEYMAPEIILGRGHDKAADWWSVGILLFEMLTGKPPFVGNRDKVQQKIVKEKLKLPSFLSSEAHSLLKGMAIRCPFQLLHKEGGKRLGSGPGGSDEIKRHKW
+>Pp1s129_113V6.1|173-429
+FELLRVVGQGAFGKVFQVQKKGTSEIYAMKVMRKEKIIERNHGDYMKAERDILTKVVHPFIVQLQYSFQTKSKLYLVLDFINGGHLFFQLFRQGTFNEDLARMYTAEIVLAVAHLHENGIIHRDLKPENILLDADGHVMLTDFGLAKEVKEDSHSNSLCGTIEYMAPEIILSKGHGKAADWWSVGILLYEMLTGQPPFTQKNKQKLQQKVIKDKIKLPTYLTADANNLLKGLLQKDPSKRLGNGPTGSRDVKQHKWF
+>Cre13.g579200.t1.1|683-898
+KVMRKERILQRDHSEYVRSERDLLTAVVHPYIVTLRFSFQTPTKLYLVLDFLNGGHLFFNLYRQGVFSEDVARLYTAEIVLAISYLHSRGIVHRDLKPENVLLDNEGHVRLTDFGLAKGNMGCEQSRTNSFIGTMEYMAPEIIEAKGHGKAVDWWSTGILMYEMLCGVPPFRAKSRQALQQQIATGKVKYPKFLSTDSQSLLKGLLIRDPNKRLGA
+>Pp1s118_230V6.1|169-425
+FELLRVVGQGAFGKVFQVQKIGTSEIYAMKVMRKQNILKKNQGSYMKAERDILTKVVHPYIVQLRYSFQTRSKLYLVLDFINGGHLFFQLYRQGTFSEDLARMYTAEIVLALAHLHKNGIIHRDLKPENILLDAEGHVMLTDFGLAKEVKEDSPSKSLCGTMEYMAPEIVQHKGHGKAADWWSVGILLYEMLTGEPPFANNNRQKLQEKIVKDKIKLPTYLTSDANNLLKGLLQKDPNKRLGSGPNGSDDIKQHKWF

_alignments/AGC_MAST.fa

@@ -0,0 +1,24 @@
+>AT3G17850.1|882-1171
+FEIIKPISRGAFGRVFLAKKRTTGDLFAIKVLKKADMIRKNAVESILAERDILINVRNPFVVRFFYSFTCRDNLYLVMEYLNGGDLYSLLRNLGCLEEDIVRVYIAEVVLALEYLHSEGVVHRDLKPDNLLIAHDGHIKLTDFGLSKVGLINSTDDLAGPAVSGTSLLDEEESRLAASEEQLERRKKRSAVGTPDYLAPEILLGTGHGATADWWSVGIILFELIVGIPPFNAEHPQQIFDNILNRKIPWPHVPEEMSAEAHDIIDRFLTEDPHQRLGARGAAEVKQHIFF
+>AT1G45160.2|670-955
+FEIIKPISRGAFGKVFLARKRTTGDFFAIKVLKKLDMIRKNDIERILQERNILITVRYPFLVRFFYSFTCRDNLYLVMEYLNGGDLYSLLQKVGCLDEEIARIYIAELVLALEYLHSLKIVHRDLKPDNLLIAYNGHIKLTDFGLSKIGLINNTIDLSGHESDVSPRTNSHHFQKNQEEERIRHSAVGTPDYLAPEILLGTEHGYAADWWSAGIVLFELLTGIPPFTASRPEKIFDNILNGKMPWPDVPGEMSYEAQDLINRLLVHEPEKRLGANGAAEVKSHPFF
+>Pp1s353_26V6.1|941-1234
+FEIIKPISRGAFGRVFLARKRITGDLFAIKVLRKADMIRKNAVESVRAERNILISVRNPFVVRFFYSFTCSENLYLVMEYLNGGDVFSLLRNMGCLDEELVRVYIAELVLALEYLHSLGIVHRDLKPDNILIAHDGHIKLTDFGLSRVGLINSTDDLSGPPVGGSTLMEDIANHHRIVSGELPQQRERRQQRSAVGTPDYLAPEILLGNSHGNAADWWSTGVILFEMLTGIPPFNAEHPQIIFDNILNRNIPWPVVPDEMSYDAEDLIDRLLTEDPDSRLGANGAAEVKAHRFF
+>Pp1s172_42V6.1|982-1275
+FEIIKPISRGAFGRVFLARKRITGDLFAIKVLRKADMIRKNAVESVKAERNILISVRNPFVVRFFYSFTCTENLYLVMEYLNGGDLFSLLRNLTCLGEEASRVYIAELVLALEYLHGLGIVHRDLKPDNLLIAHDGHIKLTDFGLSKVGLINSTDDLSGPAVGGAALMEEITKHHRIPSGELPQQRERRQQRSAVGTPDYLAPEILLGNSHGPAADWWSTGVILFEMLTGVPPFNAEHPEIIFDNILNRNIPWPYVPEEMSYEAQDFIDRLLTEDPDYRLGAKGAAEVKAHPFF
+>Pp1s285_54V6.1|1017-1309
+FEIIKPISRGAFGRVFLARKCTTGDLFAIKVLRKADMIRKNAVESVKAERNILISARNPFVVRFFYSFTCRDNLYLVMEYLNGGDMYSMLRNLGYLEESLARVYVAELVLALECLHSLGVVHRDLKPDNILIAHDGHIKLTDFGLSRVGLINSTDDLSGPATAGTMLMEESVKNQSLSPKHVHQRKIRQQRSAVGTPDYLAPEILLGTSHGPAADWWSTGVILFEFLTGIPPFNAEYPQIIFDNILNRHIPWPAVPEYMSHEAQDLIDKLLTEDPNERLGAKGAAEVKAHPFF
+>Cre06.g306950.t1.2|1010-1157-1267-1372
+FEIIKPISRGAFGRVYLARKLATGDLFAIKVMKKRDLIRKNMVESVTNERNILAMAQNPFVVRFYYSFTSRENLYIVMEYINGGDCYSLMRKFGALDEEVARQYIAETVLALEYCHAQGIIHRDLKPDNLLINAQGHVKLTDFGLSCVEHESRRAVGTPDYLAPELLLGTGHGPEVDWWALGAILYEFITGAPPFNAETPEEIFDNILDRRITWPDEDDMSCECRDLIDKLLHPNPLKRLGHRGAGEVKLHPWF
+>Pp1s275_5V6.1|957-1250
+FEIIKPISRGAFGRVFLARKRITGDLFAIKVLRKADMIRKNAVESVKAERNILISVRNPFVVRFFYSFTCSVNLYLVMEYLNGGDLFSLLRNLGCLEEEMARVYIAEIVLALEYLHGSGIVHRDLKPDNLLIAHDGHIKLTDFGLSKVGLINSTDDLSGPAVGGATLMEEITKHHKVPSGELPQQRERRQQRSAVGTPDYLAPEILLGNSHGPAADWWSTGVILFEMLTGVPPFNAEHPQIIFDNILNRNIPWPYVPEEMSYEAQDLIDRLLTEDPDYRLGAKGAAEVKAHPFF
+>Os03g50390.1|853-1144
+FEIIKPISRGAFGRVFLAKKRTTGDLFAIKVLRKADMIRKNAVESILAERDILITVRNPFVVRFFYSFTSRENLYLVMEYLNGGDLYSLLRNLGCLDEDVARIYLAEVVLALEYLHSMHIVHRDLKPDNLLIAHDGHIKLTDFGLSKVGLINSTDDLSGPAVSGSSLYGDDEPQMSEFEEMDHRARRQKRSAVGTPDYLAPEILLGTGHGTSADWWSVGVILFELIVGIPPFNAEHPQTIFDNILNRKIPWPHVPEEMSSEAQDLIDKLLTEDPHQRLGANGASEVKQHQFF
+>AT5G62310.1|754-1043
+FEIIKPISRGAFGRVFLAKKRATGDLFAIKVLKKADMIRKNAVESILAERNILISVRNPFVVRFFYSFTCRENLYLVMEYLNGGDLFSLLRNLGCLDEDMARIYIAEVVLALEYLHSVNIIHRDLKPDNLLINQDGHIKLTDFGLSKVGLINSTDDLSGESSLGNSGFFAEDGSKAQHSQGKDSRKKHAVVGTPDYLAPEILLGMGHGKTADWWSVGVILFEVLVGIPPFNAETPQQIFENIINRDIPWPNVPEEISYEAHDLINKLLTENPVQRLGATGAGEVKQHHFF
+>Os12g42660.1|611-900
+FEIIKPISRGAFGRVFLAKKRVTGDLFAIKVLKKADMIRKNAVESILAERDILISARNPFVVRFFYSFTCRENLYLVMEYLNGGDLYSLLRNLGCLDEDMARTYMAELVLALEYLHSMNVIHRDLKPDNLLISRDGHIKLTDFGLSKVGLINSTDDLSGPDVSNVLVGDHQPADAEQRAQKREQRQKQAAVGTPDYLAPEILLGMTHGPTADWWSVGVILFELLVGIPPFNAEHPQIIFDNIMNREIPWPQVPEELSFEAYDLIDKLLIENPVQRLGATGAGEVKAHPFF
+>AT1G48490.1|828-1111
+FEVMKSISRGAFGHVILARKNTTGDLFAIKVLRKADMIRKNAVESILAERDILINARNPFVVRFFYSFTCSENLYLVMEYLNGGDFYSMLRKIGCLDEANARVYIAEVVLALEYLHSEGVVHRDLKPDNLLIAHDGHVKLTDFGLSKVGLINNTDDLSGPVSSATSLLVEEKPKLPTLDHKRSAVGTPDYLAPEILLGTGHGATADWWSVGIILYEFLVGIPPFNADHPQQIFDNILNRNIQWPPVPEDMSHEARDLIDRLLTEDPHQRLGARGAAEVKQHSFF
+>Pp1s323_77V6.1|1024-1316
+FEIIKPISRGAFGRVFLARKRTTGDLFAIKVLKKADMIRKNAVESVKAERNILISARNPFVVRFFYSFTCAENLYLVMEYLNGGDMYSLLRTLGCLDEALARVYIAELVLALECLHSLGVVHRDLKPDNILIAHDGHIKLTDFGLSRVGLINSTDDLSGPAATGTMVMEESTKNQCASPKHEHQRKIRQQRSAVGTPDYLAPEILLGTSHGPAADWWSTGVILFEFLTGIPPFNAEHPQVVFDNILNRHIPWPAVPEYMSYEAQDLIDRLLTEDPTERLGANGAAEVKAHPFF

_alignments/AGC_NDR.fa

@@ -0,0 +1,40 @@
+>AT3G23310.1|123-421
+LTMIGKGAFGEVRICREKTTGNVYAMKKLKKSEMLRRGQVEHVKAERNLLAEVDSNCIVKLYCSFQDEEYLYLIMEYLPGGDMMTLLMRKDTLTEDEARFYVGETVLAIESIHKHNYIHRDIKPDNLLLDRSGHMKLSDFGLCKPLDCSILQEKDFVVAHNLSGALQSDGRPVAPRRTRSQMEQLQNWQRNRRMLAYSTVGTPDYIAPEVLLKKGYGMECDWWSLGAIMYEMLVGFPPFYSDEPMTTCRKIVNWKNYLKFPDEVRLSPEAKDLICRLLCNVEQRIGTKGANEIKEHPWF
+>Pp1s11_341V6.1|141-290-348-451
+FELLTIIGRGAFGEVRLCRAKATGEVYAMKKLKKSEMLSRGQVEHVRAERNLLAEVDSHCIVKLQYSFQDSEYLYLIMEYLPGGDMMTLLMRKDTLTEDEARFYVAQSILAIQSIHKHNYIHRDIKPDNLLLDKNGHMKLSDFGLCKPLDAYSTVGTPDYIAPEVLLKKGYGMECDWWSLGAIMFEMLVGYPPFYSDDPMNTCRKIVNWRTYLKFPDEAKLTPEAKDLICRLLCDVDHRLGCRGGDDIKAHPWF
+>Cre01.g029850.t1.1|121-415
+EALSIIGRGAFGEVRIVREKTTGKIMAMKKLKKAEMLKRGQVEHVKAERNVLAEVQNPYIVKLYYSFQDEDHLYLAMEYLPGGDTMTLLMRKDILSEEETRFYMAETILAIESIHKAGYIHRDIKPDNLLLTRDGHVKLSDFGLCKPVDVQALPTLAEGEEFNDPTLMPSTSLRPQAEQLAHWQKNRRQLAFSTVGTPDYIAPEVLLKKGYGMECDWWSLGAIMFEMLVGYPPFYSDEPLTTCRKIVNWRMFLRFPDEARLSPAARDLICRLMCDVEERIGTRGGVEEIKSHPFF
+>AT2G20470.1|126-421
+LLTMIGKGAFGEVRVCREKTTGQVYAMKKLKKAEMLRRGQVEHVRAERNLLAEVDSNYIVKLYCSFQDDDHLYLVMEYLPGGDMMTLLMRKDTLTEEEAKFYVAETVLAIESIHRHNYIHRDIKPDNLLLDRYGHLRLSDFGLCKPLDCSAIGENDFSNNSNGSTEQEAGSTAPKRTQQEQLEHWQRNRRTLAYSTVGTPDYIAPEVLLKKGYGMECDWWSLGAIMYEMLVGYPPFYSDDPMSTCRKIVNWKSHLKFPEEAILSREAKDLINSLLCSVRRRLGSKGADELKAHTWF
+>Os12g19290.1|120-268-321-425
+FELLTIIGRGAFGEVRLCREKATSNVYAMKKLKKSEMLRRGQVEHVRAERNLLAEVDSAYIVKLYCSFQDEEFLYLVMEYLPGGDMMTLLMRKDTLTDDESRFYVAETILAIESIHKHNYIHRDIKPDNLLLDRTGHLKLSDFGLCKPLLAYSTVGTPDYIAPEVLLKKGYGMECDLWSLGAIMYEMLVGYPPFYSEDPMSTCRKIVNWRSHLKFPEEAKLSPEAKDLISKLLCNADLRLGTKGAHEIKAHPWF
+>Pp1s87_129V6.1|129-279-329-433
+FELLTIIGRGAFGEVRLCREKTSSTVYAMKKLKKSEMLRRGQVEHVKAERNLLAEVDSNCIVKLYCSFQDEEYLYLIMEYLPGGDMMTLLMRKDTLSEDEARFYVGQCVLAIESIHKHNYIHRDIKPDNLLLDKNGHMKLSDFGLCKPLDCLAYSTVGTPDYIAPEVLLKKGYGMECDWWSLGAIMYEMLVGYPPFYSDEPMTTCRKIVNWRNNLKFPDEAKLAPEAKDIISRLLCDVEHRLGTRGVAEIKNHPWF
+>Pp1s86_95V6.1|54-224
+FELLTIIGRGAFGEVRLCRAKATGEVYAMKKLKKSEMLLRGQVEHVRAERNLLAEVDSHCIVKLLYSFQDSEYLYLIMEYLPGGDMMTLLMRKDTLTEDEARFYVAQSVLAIQSIHRHNYIHRDIKPDNLLLDKNGHMKLSDFGLCKPLDCSALTTLHEHEPCTDEEYREP
+>AT1G03920.1|137-435
+FELLTMIGKGAFGEVRVVREINTGHVFAMKKLKKSEMLRRGQVEHVRAERNLLAEVDSNCIVKLYCSFQDNEYLYLIMEYLPGGDMMTLLMRKDTLSEDEAKFYIAESVLAIESIHNRNYIHRDIKPDNLLLDRYGHLRLSDFGLCKPLDCSVIDGEDFTVGNAGSGGGSESVSTTPKRSQQEQLEHWQKNRRMLAYSTVGTPDYIAPEVLLKKGYGMECDWWSLGAIMYEMLVGYPPFYADDPMSTCRKIVNWKTHLKFPEESRLSRGARDLIGKLLCSVNQRLGSTGASQIKAHPWF
+>Pp1s22_423V6.1|147-299-354-457
+FELLTIIGRGAFGEVRLCRAKATGEVYAMKKLKKSEMLSRGQVEHVRAERNLLAEVDSHCIVKLLYSFQDSEYLYLIMEYLPGGDMMTLLMRKDTLTEDEARFYVAQSVLAIQSIHRHNYIHRDIKPDNLLLDKNGHLKLSDFGLCKPLDCRAAYSTVGTPDYIAPEVLLKKGYGMECDWWSLGAIMFEMLVGYPPFYSDDPMNTCRKIVNWRTYLKFPDEAKLTLEAKDLICRLLCDVDQRLGSRGGDDIKGHPWF
+>Pp1s87_126V6.1|1-125-178-281
+MKKLKKSEMLSRGQVEHVRAERNLLAEVDSHCIVKLQYSFQDSEYLYLIMEYLPGGDMMTLLMRKDTLTEDEARFYVAQSVLAIQSIHKHNYIHRDIKPDNLLLDKNGHMKLSDFGLCKPLDCRAAYSTVGTPDYIAPEVLLKKGYGMECDWWSLGAIMFEMLVGYPPFYADDPMNTCRKIVNWRTYLKFPDEAKLTHEAKDLICRLLCDVEHRLGSRGGDDIKAHPWF
+>AT5G09890.2|102-404
+FELLTVIGKGAFGEVRLCRLRSTSEVYAMKKLKKTEMLSRGQVEHVRSERNLLAEVDSRYIVKLFYSFQDSECLYLIMEYLPGGDIMTLLMREDILSEDVARFYIAESILAIHSIHQHNYVHRDIKPDNLILDKSGHLKLSDFGLCKPLDDKYSSLLLEDDEMLSQDSENQSGKSDADKAPWQMPKEQLLQWKRNRRALAYSTVGTLDYMAPEVLLKKGYGMECDWWSLGAILYEMLVGYPPFCSDDPRITCRKIINWRVCLKFPEEPKISDEARDLICRLLCDVDSRLGTRGVEEIKSHPWF
+>Os05g43570.1|116-284
+FELLTIIGRGAFGEVRLCREKASKNVYAMKKLKKSEMLRRGQVEHVKAERNLLAEVDSAFIVKLYYSFQDEEYLYLIMEYLPGGDMMTLLMRKDTLTEDEARFYIAETVLAIESIHKHSYIHRDIKPDNLLLDRSGHLKLSDFGLCKPLDSSNFPNLNEPDYTSTKGTK
+>Pp1s86_100V6.1|128-279-328-432
+FELLTIIGRGAFGEVRLCREKSSTTVYAMKKLKKSEMLRRGQVEHVKAERNLLAEVDSNCIVKLYCSFQDEDYLYLIMEYLPGGDMMTLLMRKDTLTEDEARFYVGQCVLAIESIHKHNYIHRDIKPDNLLLDKNGHMKLSDFGLCKPLDCSLAYSTVGTPDYIAPEVLLKKGYGMECDWWSLGAIMYEMLVGYPPFYSDEPMTTCRKIVNWRNNLKFPDEAKLTPEAKDLISRLLCDVENRLGTRGVPEIKNHSWF
+>Os10g33640.1|115-414
+LLTMIGKGAFGEVRVCREKNTGNVYAMKKLRKSEMLRRGQVEHVKAERNLLAEVDHHCIVKLYCSFQDSEYLYLIMEYLPGGDMMTLLMRKDTLTEDEARFYVGETVLAIEAIHRHNYIHRDIKPDNLLLDRHGHLRLSDFGLCKPLDYSNFPDLNEKDVTSTKPQSTNGDGRQQSMPKRTQQEQLEHWQKNRRTLAYSTVGTPDYIAPEVLLKKGYGMECDWWSLGAIMYEMLVGYPPFYSDEPMTTCRKIVNWRTHLKFPEEARLMTDAKDLISKLLCNVDQRLGTKGAEEIKEHSWF
+>Pp1s22_429V6.1|128-278-328-432
+FELLTIIGRGAFGEVRLCREKSSTTVYAMKKLKKSEMLRRGQVEHVKAERNLLAEVDSNCIVKLYCSFQDEKYLYLIMEYLPGGDMMTLLMRKDTLTEDESRFYVGQCVLAIESIHKHNYIHRDIKPDNLLLDKNGHMKLSDFGLCKPLDCLAYSTVGTPDYIAPEVLLKKGYGMECDWWSLGAIMYEMLVGYPPFYSDEPMTTCRKIVNWRNNLKFPDEAKLTPEAKDLISRLLCDVEHRLGTRGVAEIKNHPWF
+>AT4G33080.1|94-244-299-402
+FELLTIIGRGAFGEVRLCRERKSGNIYAMKKLKKSEMVMRGQVEHVRAERNLLAEVESHYIVKLYYSFQDPEYLYLIMEYLPGGDMMTLLMREDTLREDVARFYIAQSVLAIESIHRYNYIHRDIKPDNLLLDKDGHMKLSDFGLCKPLDCFSTVGTPDYIAPEVLLKKGYGMECDWWSLGAIMYEMLVGYPPFYADDPISTCRKIVHWRNHLKFPEDAKFSSEAKDLICRLLCNVDHRLGTGGGAQQIKDHPWF
+>AT4G14350.1|122-418
+LTMIGKGAFGEVRICREKGTGNVYAMKKLKKSEMLRRGQVEHVKAERNLLAEVDSNCIVKLYCSFQDEEYLYLIMEYLPGGDMMTLLMRKDTLTEDEARFYIGETVLAIESIHKHNYIHRDIKPDNLLLDKDGHMKLSDFGLCKPLDCSNLQEKDFTVARNVSGALQSDGRPVATRRTQQEQLLNWQRNRRMLAYSTVGTPDYIAPEVLLKKGYGMECDWWSLGAIMYEMLVGFPPFYSDDPMTTCRKIVNWRNYLKFPDEVRLSPEAKDLICRLLCNVEQRLGTKGADEIKGHPWF
+>AT1G30640.1|120-423
+FELLSIIGRGAFGEVRICKEKSTGSVYAMKKLKKSEMLRRGQVEHVKAERNVLAEVDSPFIVKLCYSFQDDEHLYLIMEYLPGGDMMTLLMRKDTLREDETRFYVAQTILAIESIHKHNYVHRDIKPDNLLITRNGHIKLSDFGLSKSLESKNFPDFKAELVDRSTKPAAEHDRLSKPPSAPRRTQQEQLLHWQQNRRTLAFSTVGTPDYIAPEVLLKKGYGMECDWWSLGAIMFEMLVGFPPFYSEEPLATCRKIVNWKTCLKFPDEAKLSIEVKDLIRRLLCNVEQRLGTKGVHEIKAHPWF
+>AT2G19400.1|106-256
+DLLSIIGRGAFGEVRLCREKKTGNIYAMKKLKKSEMLSRGQVEHVRAERNLLAEVASDCIVKLYYSFQDPEYLYLIMEYLSGGDVMTLLMREETLTETVARFYIAQSVLAIESIHKHNYVHRDIKPDNLLLDKYGHMKLSDFGLCKPLDCR
+>Os01g09200.1|116-266-321-423
+FELLTIIGRGAFGEVRLCREKTSSNIYAMKKLKKSDMVVRGQVEHVRAERNLLAEVASHCIVKLYYSFQDSEYLYLIMEYLPGGDIMTLLMREDTLTEHVARFYIAETILAIESIHKHNYIHRDIKPDNLLLDKNGHMKLSDFGLCKPIDCFSTVGTPDYIAPEVLLKKGYGMECDWWSLGAIMYEMLVGYPPFYSDDPITTCRKIVHWRNHLKFPEDSKVSPEARDLICRLLCDVDHRIGSAGADQIKAHPWF

_alignments/AGC_PDK1.fa

@@ -0,0 +1,10 @@
+>AT3G10540.1|45-311
+FELGKIYGVGSYSKVVRAKKKDNGTVYALKIMDKKFITKENKTAYVKLERIVLDQLEHPGIVKLFFTFQDTQSLYMALESCEGGELFDQITRKGRLSEDEARFYSAEVVDALEYIHNMGLIHRDIKPENLLLTLDGHIKIADFGSVKPMQDSQITVLPNAASDDKACTFVGTAAYVPPEVLNSSPATFGNDLWALGCTLYQMLSGTSPFKDASEWLIFQRIIARDIKFPNHFSEAARDLIDRLLDTDPSRRPGAGSEGYDSLKRHPF
+>AT5G04510.1|45-297
+EFGKIYGVGSYSKVVRAKKKETGTVYALKIMDKKFITKENKTAYVKLERIVLDQLEHPGIIKLYFTFQDTSSLYMALESCEGGELFDQITRKGRLSEDEARFYTAEVVDALEYIHSMGLIHRDIKPENLLLTSDGHIKIADFGSVKPMQDSQITVLPNAASDDKACTFVGTAAYVPPEVLNSSPATFGNDLWALGCTLYQMLSGTSPFKDASEWLIFQRIIARDIKFPNHFSEAARDLIDRLLDTEPSRRPGA
+>Pp1s217_11V6.2|42-301
+KLLGLGSYSKVTKAKRKNTGEIYALKIMNKKHIIRENKVKFVKMERMILDQLDHPGVVKLCFTFQDVHSLYMGLECCTGGELFEQIRRSKRMSEEDTRFYTAEIVDILEYIHSQGIVHRDLKPENILISAEGNLKLCDFGSAKMFRPLPNGFFQSEEEDSSAFVGTAEYVSPEVLHGKSASHSVDLWALGCTIYQMLEGRPPFKAATEYLTFQKVMARELSIPSHFSPEAKDLVDSLLNLKPNERLGVQGYDDIKNHPFF
+>Cre18.g749950.t1.1|29-375
+DVLGRIGDGSFSTVFLARQKQSGKQYAIKMMNKHLVMRNKMVEYIKNERFILDKFDDAGIAKLHFTFQDPDNLYMGMEYCAGGELYEQINKRGRLPLEAVRFYAAEVVLILEYLRKAQVVHRDLKPENLLLSGDGHLKLIDFGSARAFFLPAAEKPPGKQRATSFVGTAEYVSPEVLLNAPLSYPADLWALGCMIYQMIVGRPPFKAASEYLTFQKITDREFAYPGDPGYNADGEPDDEEGGEEEEEEAGGKEGKAEGGAAAVEAAAQREGADAEAAAAGGEGAGSSSGAGTGGGGGGLGAAGKVPKLRGPVVYPDDARDLTDRLLTMEPAARIGAEDMAELRAHPF
+>Os01g65230.1|51-316
+FELGKIYGVGSYSKVVRAKKKDTGNVYALKIMDKKFITKENKISYVKMERIVLDQLDHPGVIRLFFTFQDTYSLYMALESCEGGELFDQIVRKGRLSEDEARFYAAEIVDILEYLHSLGLIHRDVKPENLLLTSDGHIKIADFGSVKPTKDTPIKVLPNSTNERACTFVGTAAYVPPEVLNSAPPTFGNDLWALGCTLYQLLSGSSPFKDASEWLIFQRIIARDLKIPEYFSDDARDLIDKLLDVDPSKRPGAGPDGYVSLKKHPF

_alignments/AGC_PKA-PKG.fa

@@ -0,0 +1,28 @@
+>Pp1s69_82V6.1|474-723
+GGLFGKVKLVYSRKTKEHYALKCVSKAKVVRMNEEEHLRNEKMYMAELDHPFINRLIRTYRDQTHVYLLEELTTGRELFLFLQRVGRLQEWEAAFYAGGVLLALEYMHGKGIAYRDLKPENTLIAENGYPKLIDMGFAKRLYNRRTYSMCGTPDYMAPEIIKRQGHGKGVDYWALGCMIFEMITCTSPFNSGNDPPQMVFQKVVEGKIKFPPYMSVNAVDIVRKLLDPNPETRLGNQKSGIAEIKEHPFF
+>Cre16.g663200.t1.2|366-647
+GTVLGGGAFSRVSIVTEESTGRTYALKRMRKSAVVQCPEHVFCEQAITKNVAHPFCIRQYASFQDKYHLYFLFDLMPGGDLMDVLVAEAKVIKRRVPQGTWRIGCLAPKVKMLQGMSEDLARFYIGSIVLALEYLHNNNIVYRDLKPENVFIDASGYVKLGDFGFAKVLENGNRTYTFCGTPGYVAPENVLAHGYNYSVDWWGLGVLMYVLLTGRQPFSTPKTDDPMVVMRRIVDENYQIKYPPYLSPAAKDLISRLLERKPAKRMGMLNARAMDIKNHKWF
+>AT2G20050.1|799-1038
+VHLKDKENLLSLKRFSKQKVKKLGKEAQVLKERNLMKNVIKPSAIVPEILCTCVDQTFAAILLNTTLACPISSLLHSPLDESSVRFITGSLVSAIEDIHKNEILFRGSSPELLMLDQSGYLQIVDFRFAKKLSGERTFTICGNADYLAPEIVQGKGHGYAADWWALGVLIYYMLEGEMPFGSWRESELDTFQKIAKGQLTFPRVLSSEAEDLITKLLEVDENLRFGSQGGPESIKKHPWF
+>Pp1s81_123V6.1|902-1140
+LCKKSDDVISMKRYQRRKVQRLGREGQVLLERTLFKQLRPSPFVPHLLATPIDSDNVALVLNCVLAGPLELLLRSPLDENSARFLVANVVLAVELLHKDGVVYRGISPDVLMIDRKGRLQLVDFRFAKQMSDERTFTVCGMADFLAPEIIQGQGHGLASDWWAVGVLMYFMLQTELPFGSWRDNELEIFGRIARRQLTFPSSFSPEAVDLIDKLLVVDPTKRLGCDSHGSLAIREHPWF
+>Cre10.g443550.t1.1|829-1023
+GVLKSFKDNRVLAEVLMTVGLCTLDCLMAPLPFDEASAMYIAASVVLGLEHLHWSGVIYRGLSVHSVVVTEGGQVQLVDFRFARRNEGRAFTLCGNPEYLAPEVVEGRGHTESADLWALGVLIYCLMSGETPFASPGDDELRIYRRIVSRTLAFPPHFSPAARDLLERLLQHEPANRLGGQGPASLRALKRHPWF
+>Pp1s36_201V6.1|95-227
+KQEKSILQRISHPFVVNLLGCCQDDQCVPLITEYVCGGEFFTYFRSCGRFDDATARFYASQVLCAFEYLHGMDIMYRDLKPENLLLDEKGNIKVTDFGFAKQVDRRAYTLCGTPDYLAPEIILNKGHGKPVDW
+>Cre02.g076900.t1.1|704-962
+EFHRIIGTGQFGLVRVVRNIKTNEVYALKVMHKAPIVESKQIEHVINERKILEEACTHPFCVRLCGAYQDKASLYLLQEWVPGGELFHHLDVEGAFDEPTAMFYAANVLLALEFLHAKGIVYRDLKPENLLLDTQGYIKMADFGFAKYIGGDKTYTICGTPDYQAPEVIMRRGTTKAADYWALGVLIFEMLVGDPPFKSLTGDPWDTFRRTLSGRFYVPNFISDQAADLIFKLLQVNPDKRLGSDKRLGAEEIKRHRWF
+>Cre12.g493250.t1.1|378-660
+GELLGEGAFSRVCKVTEETTGRVFALKRMAKSAALQCPEHVFCEQHITRNIAHPFCLRQYASFQDKANLYMLFDLMPGGDLMDVLVAEAKVIKYPVADKNSLRKGCLAPKMKMWQGMEEPMSKFYIASIVLALEYLHDNSIAFRDLKPENVLIDGQGYVKLGDFGFAKQVDLGGRTYTFCGTPGYVAPENVMGRGYNHSVDWWTLGVLMYVLLTARQPFTSPKTQDPMEVMRRIVDDRWPIKYPPYMSDEARDLISHLLERKPVKRIGMLQGKARDIKMHPWF
+>Pp1s88_186V6.1|899-1135
+RKSDDIVSMKRYQRRKVQRLGREGQVLLERSLFKQLRPSPFVPHLLATPIDSDSVALVLNCVLAGPLDLLLRSPLDENSARYLVANVVLAIELLHKDGVVYRGISPDVLVIDRKGRLQLIDFRFSKKMSDERTFTVCGMADFLAPEVIQGLGHGLASDWWAVGVLMYFMLQTELPFGSWRDNELDVFGRIAHRQLTFPSSFSAEATDLIDKLLVVDPTKRLGCDSHGALAIKGHPWF
+>Cre03.g199050.t1.1|593-846
+AVAVLGAGGFGQVLLVRYAAQYWALKAISKAFVKEQGLVEHVKREKDLMAECDSPFLVRLEGTAADDTTLYMMMEAVMGGELFSYLQTRSRPLEESHARFYAASVVLALEYLHDRDLVYRDLKPENLLIDLQGYVKVTDFGFVKRLRKGTKTYTLCGTPEYLAPEIIMNKGHNGAADWWALGVLVFELCNGLPPFMDDDRLAMFRKICARELSFPKHFSKDLRHLVERLLDPNPLFRAGAGREGAAEIKAHPWF
+>Os02g17970.1|799-1030
+DKIKSLKRFYIKRVKDLHKEKHVFDEKDLMKSLSQSTCVPEVLCTCADQSYLGILLNCCLCCSLASILHAPLNESSARFYAASVVVALENLHQRSILYRGVSADILMVDRSGHLQLVDFRFAKKLQGERTYTICGIADSLAPEIVLGRGHGFSADWWALGVLIYFMLQSDMPFGSWRESELEPFAKIAKGHLVMPSTFSIEVVDLITKLLEVNENARLGAKGAESVKRHPWF
+>Pp1s59_88V6.1|41-297
+KLGPILGTGSFGRVHVAHHTPTGQVCATKSLSKASIVKSKQVLHVKQEKSILAKISHPFVVNLLGCCQDDQCVHLVIEYVCGGEFFTYLRSTGRFDEATTRFYASQVLCAFEYLHSMDIIYRDLKPENLLLDAKGNLKVTDFGFAKQIDRRTYTLCGTPDYLAPEIILNKGHGKPVDWWTFGVLIYEMLAGYPPFYDDDPVGTYQKILSGKIQFPGHFSKSAKDLLRRLLVADLTKRSTRIGCLKGGVKEIKTHAWF
+>Cre16.g669800.t1.1|99-351
+MRVIGAGSFGRVSLARELEGGRLVAIKTLNKVAIIRENQVQHVLDERAMLARVAGYPFLINLLTSFQDTDNIYLVMDYVPGGEFFTHMRDNGPLHEIHARFYVAQIILALEHLHGKGIAYRDLKPENLLIGADGYVRLTDLGFAKVVTTRTYTLCGTPDYLAPEVIMNHGHTTAVDWWSLGCVVYELLHGFPPFYTGNPQETYTRILNRSFQFPSKFGPYAVDLIDKLLTVNPATRLGAGAEGVQAVKDHPWF
+>Cre13.g568550.t1.2|780-916-1001-1092
+AFCVRQLGTFQDDHYLYLLLEYCPGGDLDRLVRAHTRKTLVPRSTWIAQVVAGPAIVWRGLPEAAVRFYAAGLVIALQELHARYVVYRDLKPGNVLLDGAGYPRLADFGMAKPLGGPGGRATSACGTLDFMAPEVVKYGLEVDWWSLGAVLYVLLTGTKPFCSPEAEAAGEDAARLLMRIIDPWYEPPLPVYLSPAARDLVKKLLTRQPRWRLGCGGGGAEEVRQHAFF

_alignments/AGC_RSK-1.fa

@@ -0,0 +1,2 @@
+>Cre15.g640750.t1.2|1136-1305
+AALSALHGAGFVYRDLKLANVLVCDGGRIRLADFGAATTALPDRPGRFGGVAGTRAYLAPEMLPWLDPDSSPGAGSRSSGSGPEPYSSTVDSWGWGLVMVELATGWSVKELHDRIVRRVCTPKAAKASPPDLPPHCGLPPLLRQLLLEHVLVRDARARWTADQIRTHPFF