Standard template pipeline generater

Simple test framework for Nextflow pipelines

tools for working with genome variation graphs

Multiscale earth mover's distance methods for tree and manifold structured data

A programming framework for agentic AI 🤖

DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.

Bring projects, wikis, and teams together with AI. AppFlowy is an AI collaborative workspace where you achieve more without losing control of your data. The best open source alternative to Notion.

ggplot2 version of heatmap

SUPPA: Fast quantification of splicing and differential splicing

Tool for the Quality Control of Long-Read Defined Transcriptomes

Transcript discovery and quantification with long RNA reads (Nanopores and PacBio)

Open-source developer platform to power your entire infra and turn scripts into webhooks, workflows and UIs. Fastest workflow engine (13x vs Airflow). Open-source alternative to Retool and Temporal.

A tool for estimating repeat sizes

Scientific workflow engine designed for simplicity & scalability. Trivially transition between one off use cases to massive scale production environments

LabPlot is a FREE, open source and cross-platform Data Visualization and Analysis software accessible to everyone.

Copy number variant caller and depth visualization utility for PacBio HiFi reads

HiPlot makes understanding high dimensional data easy

Discovering known and novel miRNAs from small RNA sequencing data

Another Gtf/Gff Analysis Toolkit

Python library for calling Cytoscape Automation via CyREST

Biological foundation modeling from molecular to genome scale

Tandem repeat genotyping and visualization from PacBio HiFi data

Simple Job Manager

Message Passing Neural Networks for Molecule Property Prediction

Inference code for Llama models