An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)

🐟 🍣 🍱 Highly-accurate & wicked fast transcript-level quantification from RNA-seq reads using selective alignment

A single molecule sequence assembler for genomes large and small.

Graph-based alignment (Hierarchical Graph FM index)

A fast multi-threaded k-mer counter

A fast whole-genome aligner based on de Bruijn graphs