AlphaFold 3 inference pipeline.

an integrated tool for molecular docking and virtual screening

PDF GPT allows you to chat with the contents of your PDF file by using GPT capabilities. The most effective open source solution to turn your pdf files in a chatbot!

Code used for microsporidia database project.

Phylogenetic orthology inference for comparative genomics

An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)

A simple plot library

Fungal rRna Operon Database using Ont sequencing

Genome Annotation Pipeline

MetaWRAP - a flexible pipeline for genome-resolved metagenomic data analysis

An Autonomous LLM Agent for Complex Task Solving

🌱 Web based ssh client

A fast whole-genome aligner based on de Bruijn graphs

all methods related to Enterobase

🦠 A comprehensive R package for deep mining microbiome

Differential expression of RNA-seq data using the Negative Binomial

🐟 🍣 🍱 Highly-accurate & wicked fast transcript-level quantification from RNA-seq reads using selective alignment

A fast multi-threaded k-mer counter

Trinity RNA-Seq de novo transcriptome assembly

Iso-Seq - Scalable De Novo Isoform Discovery from Single-Molecule PacBio Reads

Tools (written in C using htslib) for manipulating next-generation sequencing data

A program for detection of tRNA genes

Python programs for processing GFF3 files

Genome assembly scaffolding using information from paired-end/mate-pair libraries, long reads, and synteny to closely related species.

SSPACE Basic, SSAKE-based Scaffolding of Pre-Assembled Contigs after Extension

TGS scaffolding

The modified version of sspac_longread.pl, add compatibility with blasr5.x

Chromosome-level scaffolding using multiple references

Use long transcriptome reads to scaffold genomes