a generalist algorithm for cellular segmentation with human-in-the-loop capabilities

Official implementation of DeepLabCut: Markerless pose estimation of user-defined features with deep learning for all animals incl. humans

Automated 3D brain registration with support for multiple species and atlases.

Histology processing

R package for segmentation, registration and generating web-based brain atlases from microscope images

Automated 3D cell detection in very large images

A Python package to visualise neuroanatomical data in atlas space

Janelia Animal Behavior Detector