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update documentation on "features"
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rcorces committed Jun 9, 2022
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Showing 1 changed file with 4 additions and 2 deletions.
6 changes: 4 additions & 2 deletions R/ArchRBrowser.R
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Expand Up @@ -646,8 +646,10 @@ ArchRBrowserTrack <- function(...){
#' Blue-colored genes are on the minus strand and red-colored genes are on the plus strand), and "loopTrack" (links between a peak and a gene).
#' @param sizes A numeric vector containing up to 3 values that indicate the sizes of the individual components passed to `plotSummary`.
#' The order must be the same as `plotSummary`.
#' @param features A `GRanges` object containing the "features" to be plotted via the "featureTrack". This should be thought of as a
#' bed track. i.e. the set of peaks obtained using `getPeakSet(ArchRProj))`.
#' @param features A `GRanges` (for a single feature track) or `GRangesList` (for multiple feature tracks) object containing the "features" to
#' be plotted via the "featureTrack". This should be thought of as a bed track. i.e. the set of peaks obtained using `getPeakSet(ArchRProj))`.
#' If you provide a `GRangesList`, then each element of that object must be named and this name will be used on the plot.
#' For example - `GRangesList("peaks" = peak_gr, "other" = other_gr)`.
#' @param loops A `GRanges` object containing the "loops" to be plotted via the "loopTrack".
#' This `GRanges` object start represents the center position of one loop anchor and the end represents the center position of another loop anchor.
#' A "loopTrack" draws an arc between two genomic regions that show some type of interaction. This type of track can be used
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