A Python library for fast and easy access to genomic resources such as sequence, data tracks, and annotations

Single-header C++ library for fast/low-memory VCF (Variant Call Format) parsing.

Statistical Rethinking Course for Jan-Mar 2023

This repo contains my solutions to “Introduction to Machine Learning Interviews” by Chip Huyen.

Drawing functions for Demes demographic models

Analysis for the second consortium paper.

Public course materials for INFO 510

Infer demographic history with the Moran model

defiNETti is a program for performing Bayesian inference on exchangeable (or permutation-invariant) data via deep learning. In particular, it is well-suited for population genetic applications.

Lecture Notes on Computational and Mathematical Population Genetics

Classification Workshop in R with caret

Code for Mastering Python for Bioinformatics (O'Reilly, 2021, ISBN 9781098100889)

Python code written for MIT's Machine Learning course offered on edX

Hybridization Detection with Convolutional Neural Networks

A scikit-learn-compatible module to estimate prediction intervals and control risks based on conformal predictions.