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The official repository of Uni-pKa

Python 56 10 Updated Apr 1, 2025

An extremely fast Python package and project manager, written in Rust.

Rust 51,046 1,437 Updated Apr 23, 2025

JAX-Toolbox

Jupyter Notebook 300 58 Updated Apr 24, 2025

Non-uniform fast Fourier transform library of types 1,2,3 in dimensions 1,2,3

C++ 337 84 Updated Apr 23, 2025

Release for Improved Denoising Diffusion Probabilistic Models

Python 3,520 506 Updated Jul 18, 2024

Annotated implementations of equivariant (graph) neural networks in Jax: EGNN, SEGNN, NequIP.

Python 32 4 Updated Mar 1, 2025
Jupyter Notebook 3 Updated Apr 6, 2025

Home for "How To Scale Your Model", a short blog-style textbook about scaling LLMs on TPUs

HTML 245 36 Updated Apr 22, 2025

train and use graph-based ML models of potential energy surfaces

Python 88 4 Updated Apr 23, 2025

Machine-Learned Interatomic Potential eXploration (mlipx) is designed at BASF for evaluating machine-learned interatomic potentials (MLIPs). It offers a growing set of evaluation methods alongside …

Python 78 6 Updated Apr 23, 2025

cuEquivariance is a math library that is a collective of low-level primitives and tensor ops to accelerate widely-used models, like DiffDock, MACE, Allegro and NEQUIP, based on equivariant neural n…

Python 210 11 Updated Apr 18, 2025

Public development project of the LAMMPS MD software package

C++ 2,435 1,805 Updated Apr 23, 2025

Latent Program Network (from the "Searching Latent Program Spaces" paper)

Jupyter Notebook 81 9 Updated Mar 11, 2025

High level API for using machine learning models in OpenMM simulations

Python 5 1 Updated Oct 29, 2024

Algorithms to analyze and predict molecular structures

Python 17 3 Updated Sep 3, 2024

AlphaFold 3 inference pipeline.

Python 6,392 800 Updated Apr 14, 2025

Zero Shot Molecular Generation via Similarity Kernels

Python 19 3 Updated Jan 24, 2025

Benchmarking foundation Machine Learning Potentials with Lattice Thermal Conductivity from Anharmonic Phonons

Python 16 2 Updated Oct 30, 2024

analysis scripts for repex simulations

Jupyter Notebook 1 Updated Apr 22, 2024

MESS: Modern Electronic Structure Simulations

Python 28 2 Updated Mar 31, 2025

Open Babel is a chemical toolbox designed to speak the many languages of chemical data.

C++ 1,161 435 Updated Mar 4, 2025

Packmol - Initial configurations for molecular dynamics simulations

Fortran 261 52 Updated Mar 31, 2025

The fundamental package for scientific computing with Python.

Python 29,350 10,744 Updated Apr 24, 2025

FAIR Chemistry's library of machine learning methods for chemistry

Python 1,046 296 Updated Apr 23, 2025

Puzzles for learning Triton

Jupyter Notebook 1,594 126 Updated Nov 18, 2024

Development repository for the Triton language and compiler

MLIR 15,332 1,945 Updated Apr 24, 2025

CUDA implementations of MACE models

C++ 14 1 Updated Jan 17, 2025

Python implementation of the multistate Bennett acceptance ratio (MBAR)

Python 250 94 Updated Mar 21, 2025

High-quality implementations of standard and SOTA methods on a variety of tasks.

Python 1,500 210 Updated Apr 10, 2025

Common utilities in JAX/Flax to use across research projects

Python 2 Updated Dec 14, 2023
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