A collection of CLI modules for Slicer4 to enable users to train lesion segmentation models on their own data and then perform segmentation. A module to train lesion segmentation models and another to use those models to segment lesions are included.
Currently Slicer4 is required.
$ git clone [email protected]:msscully/LesionSegmentation.git
$ mkdir LesionSegmentation-build
$ cd LesionSegmentation
$ cmake -DSlicer_DIR:PATH=/path/to/Slicer-Superbuild-Debug/Slicer-build ../LesionSegmentation
$ make
Once this project has been built add the build directory to Slicer4's modules directory. This can be done by going to "View"->"Application Settings"->"Module settings" and add the path to the LesionSemenation-build directory and restart Slicer.
(The 3D Slicer License)
Copyright © 2012 Mark Scully
This software is distributed under the 3D Slicer license, a BSD-style open source license that is compatible with the Open Source Definition by The Open Source Initiative and contains no restrictions on use of the software. Please read the full 3D Slicer License Agreement before downloading or using this code.