Source for the QIIME 2 Framework (Q2F).

Open source code for AlphaFold 2.

This is an attempt to create, literally, the worst dataset in the world. Useful for testing (hopefully) and catharsis (likely).

Library to help align terms in data templates via AI semantic matching and fuzzy search

Extensible framework and GUI for processing data files

Collation of metadata examples and notes for the project

Development of the Ocean Data and Information System (ODIS) architecture

goos-erddap-demo

A repository for the intercomparison of microbial community observation procedures

Multi-omics pipeline for the GLAMR database

Home page for NOAA 'Omics Github repository

PARTIE is a program to partition sequence read archive (SRA) metagenomics data into amplicon and shotgun data sets. The user-supplied annotations of the data sets can not be trusted, and so PARTIE …

Multinomial Logistic-Normal Models (really fast)

Bayesian Inferential Regression for Differential Microbiome Analysis

Get microbiome data from various repos

Previous guide to omics data management, including NOAA Omics Data Management Plan.

Genomic Biodiversity Interest Group

PEMA: a flexible Pipeline for Environmental DNA Metabarcoding Analysis of the 16S/18S rRNA, ITS and COI marker genes

Florida Commercial Watermen's Conservation (FCWC) citizen science water quality monitoring application with NOAA IEA Gulf of Mexico

Server software stack for NOAA's Integrated Ecosystem Assessment (IEA) program, containerized using Docker

visualization app for environmental DNA (eDNA), using R shiny