SPAdes Genome Assembler

A single molecule sequence assembler for genomes large and small.

A deep learning framework for molecular docking

AutoDock Vina

a Bioinformatics Application for Navigating De novo Assembly Graphs Easily

AutoDock for GPUs and other accelerators

Fast Whole-Genome Similarity (ANI) Estimation

Genome annotation with AUGUSTUS

NEW location of IQ-TREE software for efficient phylogenomic software by maximum likelihood http://www.iqtree.org

Efficient phylogenomic software by maximum likelihood

The Rosetta Bio-macromolecule modeling package.

Fast and High Throughput Algorithm for PacBio Long Read Self-Correction

Vina-GPU 2.0 accelerates AutoDock Vina and its related commonly derived docking methods, such as QuickVina 2 and QuickVina-W with GPUs.

Vina-GPU 2.1, an improved docking toolkit for faster speed and higher accuracy on the virtual screening

Bio++ Program Suite

coevol -- Correlated evolution of substitution rates and quantitative traits