Find, circularise and annotate mitogenome from PacBio assemblies

Pipelines for eukaryotic pangenome analysis from McCarthy & Fitzpatrick (2019).

AlphaFold 3 inference pipeline.

a UNIX shell toolkit for processing and analyzing multiple sequence alignments and phylogenies

An analysis and visualization platform for 'omics data

a python package for molecular formula analysis in MS-based small molecule studies

Bottom-up MS/MS interrogation & Experiment-specific global annotation

A deep learning framework for molecular docking

Vina-GPU 2.1, an improved docking toolkit for faster speed and higher accuracy on the virtual screening

Vina-GPU 2.0 accelerates AutoDock Vina and its related commonly derived docking methods, such as QuickVina 2 and QuickVina-W with GPUs.

The Rosetta Bio-macromolecule modeling package.

This is the development home of the workflow management system Snakemake. For general information, see

Github Pages template for academic personal websites, forked from mmistakes/minimal-mistakes

Ask questions about biosynthetic gene clusters in your genome dataset using Retrieval-Augmented Generation (RAG) from a BGCFlow run.

翻墙-科学上网

A community-maintained Python framework for creating mathematical animations.

😎 Awesome lists about all kinds of interesting topics

📚 Freely available programming books

PyGWalker: Turn your pandas dataframe into an interactive UI for visual analysis

Snakemake workflow for the analysis of biosynthetic gene clusters across large collections of genomes (pangenomes)

为GPT/GLM等LLM大语言模型提供实用化交互接口，特别优化论文阅读/润色/写作体验，模块化设计，支持自定义快捷按钮&函数插件，支持Python和C++等项目剖析&自译解功能，PDF/LaTex论文翻译&总结功能，支持并行问询多种LLM模型，支持chatglm3等本地模型。接入通义千问, deepseekcoder, 讯飞星火, 文心一言, llama2, rwkv, claude2, m…

An R package designed for drawing gene arrow maps

FBMN-STATS: A hitchhiker's guide to statistical analysis of Feature-based Molecular Networks

mzmine source code repository

[NeurIPS 2023] DrugCLIP: Contrastive Protein-Molecule Representation Learning for Virtual Screening

Making Protein folding accessible to all!

Repository to create and run your own CAGECAT instance.

Generating iToL annotations from Spreadsheet or CSV files