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@maclean-lab

MacLean Lab

Popular repositories Loading

  1. RVAgene RVAgene Public

    Recurrent Variational Auto gene encoder

    Jupyter Notebook 20 5

  2. Cell-Cell-Communication Cell-Cell-Communication Public

    Code to accompany the paper: 10.1242/dev.199779

    Jupyter Notebook 7 1

  3. singlecell-parinf singlecell-parinf Public

    Python 4

  4. stemcell-superhero stemcell-superhero Public

    Interactive cell differentiation model demo

    Julia 4 1

  5. popInfer popInfer Public

    GRN inference with joint scRNA-seq + scATAC-seq data

    R 3 1

  6. ModelingMDSCs ModelingMDSCs Public

    Code for Myeloid-derived suppressor cell dynamics control outcomes in the metastatic niche

    Jupyter Notebook 2 1

Repositories

Showing 10 of 10 repositories
  • network-logic-EMT Public

    GRN models of EMT to investigate the effects of network logic on multistable phenotypes

    maclean-lab/network-logic-EMT’s past year of commit activity
    MATLAB 1 MIT 0 0 0 Updated Dec 7, 2024
  • Cell-Cell-Communication Public

    Code to accompany the paper: 10.1242/dev.199779

    maclean-lab/Cell-Cell-Communication’s past year of commit activity
    Jupyter Notebook 7 MIT 1 0 0 Updated Dec 6, 2024
  • scFMC-model Public

    Github repository for "Developmental hematopoietic stem cell fate decisions explain clonal dynamics over lifetime"

    maclean-lab/scFMC-model’s past year of commit activity
    Jupyter Notebook 2 0 0 0 Updated Dec 2, 2024
  • model-discovery Public
    maclean-lab/model-discovery’s past year of commit activity
    Python 2 0 0 0 Updated Oct 20, 2024
  • dynamicEMT-genes Public
    maclean-lab/dynamicEMT-genes’s past year of commit activity
    Jupyter Notebook 1 MIT 0 0 0 Updated Oct 11, 2024
  • stemcell-superhero Public

    Interactive cell differentiation model demo

    maclean-lab/stemcell-superhero’s past year of commit activity
    Julia 4 1 0 0 Updated Apr 19, 2024
  • popInfer Public

    GRN inference with joint scRNA-seq + scATAC-seq data

    maclean-lab/popInfer’s past year of commit activity
    R 3 MIT 1 0 0 Updated Apr 24, 2023
  • ModelingMDSCs Public

    Code for Myeloid-derived suppressor cell dynamics control outcomes in the metastatic niche

    maclean-lab/ModelingMDSCs’s past year of commit activity
    Jupyter Notebook 2 1 0 0 Updated Apr 24, 2023
  • singlecell-parinf Public
    maclean-lab/singlecell-parinf’s past year of commit activity
    Python 4 0 0 0 Updated Mar 27, 2023
  • RVAgene Public

    Recurrent Variational Auto gene encoder

    maclean-lab/RVAgene’s past year of commit activity
    Jupyter Notebook 20 MIT 5 2 0 Updated Jan 12, 2023

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