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Issues list

Bug: No peaks detected in not-blacklisted regions when a blacklist is given to macs3 hmmratac Bug Report
#680 opened Dec 5, 2024 by MariaRig
@taoliu
2
Bug: Runtime error pybind11::handle::inc_ref() PyGILState_Check() failure. Bug Report
#666 opened Oct 21, 2024 by Kiliankleemann
@taoliu
1
Bug: Illegal instruction (core dumped) Bug Report
#663 opened Oct 7, 2024 by marinafloresp
@taoliu
1
Bug: Callvar throws an error when run on broadPeak file Bug Report
#643 opened May 2, 2024 by LinearParadox
@taoliu
15
Bug: undefined symbol: __pow_finite Bug Report
#637 opened Apr 4, 2024 by jowodo
@taoliu
3
Feat: Reduction of memory consumption Feature Request
#628 opened Feb 25, 2024 by diego-rt
@taoliu
3
Feat: Support to output multiple output formats when using hmmratac mode Feature Request
#581 opened Aug 3, 2023 by ketakibhide
@taoliu
Feat: Support for CRAM Feature Request
#578 opened Aug 2, 2023 by bcantarel
1
@taoliu
4
Q: using macs2 to call peaks on eCLIP-seq data get an error General Question
#423 opened Nov 21, 2020 by qicaibiology
@taoliu
2
Q: Peakcalling in paired-end bam as single-end and keeping all reads Feature Request General Question
#421 opened Nov 5, 2020 by MbDiop
@taoliu
5
Q: -log10(qvalue) are 0 in output files General Question
#409 opened Jul 9, 2020 by MalindaH
@taoliu
2
Q: Can peak num be affected by changing chromosome notation? General Question
#408 opened Jul 9, 2020 by AIBio
@taoliu
1
AssertionError: slocal can't be smaller than d Bug Report
#407 opened Jul 8, 2020 by kmavrommatis
@taoliu
1
Q: Filter Pvalue for narrowPeak files is reasonable? General Question
#406 opened Jul 8, 2020 by yirenheihei
@taoliu
1
Feat: Remove secure strings from travis.yml Feature Request
#405 opened Jul 1, 2020 by taoliu
@taoliu
Q: The number of reported differential peaks is much lower than the number of originally called peaks: Why? General Question
#402 opened Jun 11, 2020 by eregenyi
@taoliu
1
Feat: Quick peak calling Feature Request
#399 opened Jun 1, 2020 by taoliu
@taoliu
Q: filterdup result for BAMPE General Question
#398 opened May 28, 2020 by olechnwin
@taoliu
1
number of peaks when setting q-value and p-value General Question
#395 opened May 26, 2020 by dahun73
@taoliu
2
Advanced: Call peaks using MACS2 subcommands - How to obtain fold enrichment General Question
#394 opened May 20, 2020 by olechnwin
@taoliu
2
Q: What parameters would you recommend optimizing, and what could be the reason for some peaks not being called? General Question
#391 opened May 12, 2020 by eregenyi
@taoliu
7
Version 1.4.2 is not in the releases section General Question
#389 opened May 1, 2020 by Drmirdeep
@taoliu
1
Q: ChIPSeq calling peaks with SPMR General Question
#388 opened May 1, 2020 by bioinfograd
@taoliu
2
Feat: Genrich like AUC peak calling method Feature Request
#385 opened Apr 20, 2020 by taoliu MACS3
@taoliu @xindong95
Feat: A new subcommand to output peak-count-matrix by taking MACS2 peaks and bdg files. Feature Request
#372 opened Apr 1, 2020 by taoliu
@taoliu @pfren1998
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