GitHub - malithakabir/notebook: Notebooks under development

Branches Tags

Name		Name	Last commit message	Last commit date
Latest commit History 42 Commits
.ipynb_checkpoints		.ipynb_checkpoints
1CRN.pdb		1CRN.pdb
4i22.pdb		4i22.pdb
4i22_ligand-Copy1.paul.pdb		4i22_ligand-Copy1.paul.pdb
4i22_ligand.pdb		4i22_ligand.pdb
4i22_protein-Copy1.pdb		4i22_protein-Copy1.pdb
4i22_protein.pdb		4i22_protein.pdb
A1_browseMolConformers_github_issue_partial_solve.ipynb		A1_browseMolConformers_github_issue_partial_solve.ipynb
A2_GeometryOptimization.ipynb		A2_GeometryOptimization.ipynb
A3_py3Dmol_EnablingInsertFunctionForDifferentRepresentation(Protein-Ligand).ipynb		A3_py3Dmol_EnablingInsertFunctionForDifferentRepresentation(Protein-Ligand).ipynb
A4_drawMol3D.ipynb		A4_drawMol3D.ipynb
B1_BrowsingConformations_Old.ipynb		B1_BrowsingConformations_Old.ipynb
B2_For_GSoC_2017_Old.ipynb		B2_For_GSoC_2017_Old.ipynb
B3_For_Paul_Czodrowski_Old.ipynb		B3_For_Paul_Czodrowski_Old.ipynb
BrowseMultimolsV11.ipynb		BrowseMultimolsV11.ipynb
BrowseMultimolsV12.ipynb		BrowseMultimolsV12.ipynb
BrowseMultimolsV13.ipynb		BrowseMultimolsV13.ipynb
BrowseMultimolsV3.ipynb		BrowseMultimolsV3.ipynb
BrowseMultimolsV4.ipynb		BrowseMultimolsV4.ipynb
BrowseMultimolsV5.ipynb		BrowseMultimolsV5.ipynb
BrowseMultimolsV6.ipynb		BrowseMultimolsV6.ipynb
BrowseMultimolsV7.ipynb		BrowseMultimolsV7.ipynb
BrowseMultimolsV8.ipynb		BrowseMultimolsV8.ipynb
BrowseMultimolsV9.ipynb		BrowseMultimolsV9.ipynb
C1_testing_notebook.ipynb		C1_testing_notebook.ipynb
C2_interact_v1.ipynb		C2_interact_v1.ipynb
C3_trying_ipy_v1_good_codes.ipynb		C3_trying_ipy_v1_good_codes.ipynb
C4_TestingAnything.ipynb		C4_TestingAnything.ipynb
C5_rdkit_module_load_check.ipynb		C5_rdkit_module_load_check.ipynb
C6_py3DmolEdit.ipynb		C6_py3DmolEdit.ipynb
C7_py3DmolEdit.ipynb		C7_py3DmolEdit.ipynb
C8_py3DmolEdit.ipynb		C8_py3DmolEdit.ipynb
C9_py3Dmol_insert_and_update.ipynb		C9_py3Dmol_insert_and_update.ipynb
ChemUtils.py		ChemUtils.py
D1_For_Paul_Czodrowski.ipynb		D1_For_Paul_Czodrowski.ipynb
D2_For_Paul_Czodrowski.ipynb		D2_For_Paul_Czodrowski.ipynb
D3_For_Paul_Czodrowski.ipynb		D3_For_Paul_Czodrowski.ipynb
E1_py3Dmol_insert_and_update-WrappingFunctions.ipynb		E1_py3Dmol_insert_and_update-WrappingFunctions.ipynb
E2_molscroller.ipynb		E2_molscroller.ipynb
ExtractMolFragmentByGregUpdatedByMalitha3.ipynb		ExtractMolFragmentByGregUpdatedByMalitha3.ipynb
IPythonConsole.py		IPythonConsole.py
IPythonConsole.pyc		IPythonConsole.pyc
IPythonConsoleIntegration.py		IPythonConsoleIntegration.py
IPythonConsoleIntegration2.py		IPythonConsoleIntegration2.py
IPythonConsoleIntegration3.py		IPythonConsoleIntegration3.py
IPythonConsoleIntegration5.py		IPythonConsoleIntegration5.py
IPythonConsoleIntegration6.py		IPythonConsoleIntegration6.py
IPythonConsoleIntegration7.py		IPythonConsoleIntegration7.py
IPythonConsole_beforeWork.py		IPythonConsole_beforeWork.py
JSInteraction.ipynb		JSInteraction.ipynb
LigandExtract.py		LigandExtract.py
colors.txt		colors.txt
get_ligand_coord_openbabel.py		get_ligand_coord_openbabel.py
github_com_rdkit_rdkit_pull_1484.pdf		github_com_rdkit_rdkit_pull_1484.pdf
ligandExtractV2.ipynb		ligandExtractV2.ipynb
ligand_exported_from_chimera.pdb		ligand_exported_from_chimera.pdb
ligand_exported_from_chimera.sdf		ligand_exported_from_chimera.sdf
outputfile_obabel.sdf		outputfile_obabel.sdf
outputfile_pymol.sdf		outputfile_pymol.sdf
pdb_processor.py		pdb_processor.py
pdb_processor.pyc		pdb_processor.pyc
protein_ligand_render_onclick.html		protein_ligand_render_onclick.html
readme.txt		readme.txt
scroll_1.html		scroll_1.html
scroll_2.html		scroll_2.html
scroll_3.html		scroll_3.html

Repository files navigation

This is intended for collaboration between Paul Czodrowski and Malitha Humayun Kabir.
If you are not invited or landed here accidentally, we request you not to use this site.
Thank you. 
https://ddi17.website:8888/tree