bug fix for mappedmates file

marbl · Feb 9, 2012 · 529a240 · 529a240
1 parent 21e9dd8
commit 529a240
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Showing 2 changed files with 2 additions and 2 deletions.
diff --git a/setup.py b/setup.py
@@ -5,7 +5,7 @@
 from distutils.extension import Extension
 from Cython.Distutils import build_ext
 
-ext_modules = [Extension("preprocess", ["./src/preprocess.py"]),Extension("mapreads",["./src/mapreads.py"]),Extension("findorfs",["./src/findorfs"]),Extension("findscforfs",["./src/findscforfs"]),Extension("scaffold",["./src/scaffold.py"])]
+ext_modules = [Extension("preprocess", ["./src/preprocess.py"]),Extension("mapreads",["./src/mapreads.py"]),Extension("findorfs",["./src/findorfs.py"]),Extension("findscforfs",["./src/findscforfs.py"]),Extension("scaffold",["./src/scaffold.py"])]
 
 # Utility function to read the README file.
 # Used for the long_description.  It's nice, because now 1) we have a top level

diff --git a/src/mapreads.py b/src/mapreads.py
@@ -293,7 +293,7 @@ def map2contig():
         new_matefile.close()
         badmatefile.close()
         mateheader.close()
-        run_process(_settings, "cat %s/Assemble/out/%s.lib%d.hdr >> %s/Assemble/out/%s.lib%d.mappedmates "%(_settings.rundir,_settings.PREFIX, lib.id,_settings.rundir,_settings.PREFIX,lib.id))
+        run_process(_settings, "cat %s/Assemble/out/%s.lib%d.mappedmates >> %s/Assemble/out/%s.lib%d.hdr "%(_settings.rundir,_settings.PREFIX, lib.id,_settings.rundir,_settings.PREFIX,lib.id))
 
     ctg_cvg_file.close()
     tigr_file.close()