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onv1.5rc3

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Commits on Jun 5, 2015

• Update create_summary.py

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  skoren

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Commits on Apr 6, 2015

• Fix indentation

  skoren

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Commits on Apr 5, 2015

• Catch unknown key error and continue

  skoren

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Commits on Feb 20, 2015

• Fix incorrect type error

  skoren

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Commits on May 27, 2014

• Skip propagate fully for speed

  skoren

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Commits on Apr 24, 2014

• Disable skipping of mapreads and assemble steps

  skoren

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Commits on Apr 10, 2014

• fix plots to run on chrome

  treangen

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Commits on Mar 3, 2014

• Fix step name

  skoren

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Commits on Jan 24, 2014

• Skip creating plot for missing data

  skoren

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• Fix ref before def

  skoren

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Commits on Jan 22, 2014

• Update to match renamed postprocess file names

  skoren

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Commits on Jan 20, 2014

• Update text reporting contaminant

  skoren

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Commits on Nov 27, 2013

• Remove requirement for matplotlib. Plots will be skipped if not available

  skoren

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Commits on Nov 19, 2013

• Update to move results displayed in HTML to HTML dir to keep it self-contained

  skoren

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Commits on Nov 15, 2013

• Minor updates to report formatting

  skoren

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Commits on Nov 11, 2013

• Fix bug creating html report when validation is skipped

  skoren

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Commits on Nov 7, 2013

• Remove debug output

  skoren

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• Fix formatting of validate output in html report

  skoren

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Commits on Oct 29, 2013

• Fix incorrect read count for unmated libs

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  skoren

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Commits on Oct 25, 2013

• Fix reads not being counted for unpaired library properly

  skoren

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• Fix preprocess output for unmated libs

  skoren

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Commits on Oct 24, 2013

• Compute percentage classified for a genome

  skoren

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Commits on Oct 17, 2013

• Fix bug in highlighting validate rows

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  skoren

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Commits on Sep 25, 2013

• Add library info to output

  skoren

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Commits on Sep 22, 2013

• Update web report tables to look nicer, including additions to stylesheet.

  skoren

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Commits on Sep 9, 2013

• Add metamos version file

  skoren

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• Fix missing escape character for "

  skoren

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• shortening citation

  treangen

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• Update default step

  skoren

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• Do not allow clicking on failed steps

  skoren

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• Create asm line when only one contig is present

  skoren

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• Add info on selected assembler to validate step

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Commits on Sep 8, 2013

• Run read mapping for each assembler to input to MLAP. Added step for running MLAP and add MLAP results to HTML report

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Commits on Aug 18, 2013

• Update sort_contigs to use shuffleBank if available. Will run faster on large datasets since it will only stream the bakn once instead of constantly seeking

  skoren

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Commits on Aug 12, 2013

• Check matplotlib version on installation, skip plot generation with bad matplot libs

  skoren

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