The project is under construction! There's some bugs that I am working on!
This is a visualization plugin for visualizing clusters of neurons learned using the EnsemblePursuit algorithm (https://github.com/MouseLand/EnsemblePursuit) from activity traces that have been extracted from calcium imaging recordings using spks.npy and stat.npy from the suite2p library https://github.com/MouseLand/suite2p
Usage:
This software requires pip installed EnsemblePursuit, numpy, sklearn, vispy, pyqtgraph. Clone this repository. In the command line cd to the cloned repository folder and run:
python run_fireworks.py --stat path_to_stat_file --spks path_to_spks file --n_ens number_of_clusters --lam regularization_parameter 0.01
An example file from mouse V1 viewing sparse noise stimuli can be found here:
This project got into top 20 in the AlgoExpert software engineering competition and a video about using the program and the algorithm can be found here:
