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Issues: markovmodel/PyEMMA

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57 Open 835 Closed
57 Open 835 Closed
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Issues list

NotImplementedError: MSM estimation with connectivity='none' is currently not implemented.
#1591 by Harshitasahni was closed May 22, 2023
3
how to import solvent accessible surface area as a feature in pyemma?
#1586 by satyajitkhatua09 was closed Jan 9, 2023
5
Got ValueError associated with dimensionality when using a tica object
#1585 by ryankzhu was closed Dec 7, 2022
4
how adjusting simulation timestep affects lag times
#1580 by cgseitz was closed Nov 3, 2022
7
Possibility of specifying the tolerance for the MSM class
#1578 by wehs7661 was closed Oct 25, 2022
1
5
ignore
#1577 by cgseitz was closed Oct 7, 2022
No return when using pyemma.msm.its
#1576 by yingioi0 was closed Sep 21, 2022
3
PyEMMA on MAC M1 - installation not working
#1572 by toth12 was closed Sep 6, 2022
3
ipywidgets.version_info is deprecated since version a6 causing progress.reporter__init__.py to fail
#1571 by apayne97 was closed Sep 7, 2022
1
How to extract structure from near the center of the clusters?
#1570 by buruiyu was closed Aug 18, 2022
1
Basis of the active state fraction and active count fraction
#1569 by Bazzinga18 was closed Aug 2, 2022
2
Different transition time in compare to experimental results.
#1568 by Bazzinga18 was closed Aug 2, 2022
1
Secondary structure in PyEMMA
#1566 by rubinanoor9 was closed Jun 20, 2022
5
Problems with loading more than two trajectories
#1564 by orthonalmatrix was closed May 16, 2022
2
Migrate network plots to deeptime
#1561 by clonker was closed May 5, 2022 PyEMMA 3
unable to execute
#1554 by debanjansen48 was closed Sep 11, 2022
2
Progress stuck after ITS estimation
#1553 by satyajitkhatua09 was closed Apr 14, 2022
3
using radius of gyrationn in the custom featurizer
#1552 by instaM was closed Mar 18, 2022
4
minflux in plot_markov_model seems to be malfunctioning
#1551 by orthonalmatrix was closed May 20, 2022
4
CK test doesn't justify HMM
#1549 by Bazzinga18 was closed Aug 14, 2022
1
Changing the units of the rate in plot_markov_model
#1548 by orthonalmatrix was closed Mar 14, 2022
2
Python 3.10 release?
#1547 by sroet was closed Sep 13, 2022
1
4
Extracting PDB structures from TICA plot or PCA plot in PyEMMA 2.5.7 wontfix
#1544 by satyabrata400 was closed Nov 3, 2022
2
torsion feature for specific range
#1543 by Bazzinga18 was closed Feb 22, 2022
2
Is transition time(mfpt) from one state to another may be different from time observed in MD simulations? wontfix
#1542 by Bazzinga18 was closed Nov 3, 2022
4
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