Read, modify and write DICOM files with python code

Single sample Gene Set Enrichment analysis (ssGSEA) and PTM Enrichment Analysis (PTM-SEA)

Read specialized NGS formats as data frames in R, Python, and more.

A DSL for data-driven computational pipelines

Official code repository for GATK versions 4 and up

GTEx & TOPMed data production and analysis pipelines

Python tool for converting files and office documents to Markdown.

Flet enables developers to easily build realtime web, mobile and desktop apps in Python. No frontend experience required.

The scikit-learn Modeling Companion

A simple rust application to count alt reads in a specified list of positions.

WDL that runs Annovar and a filtering R Script on the output of Mutect2

A Python library for amortized Bayesian workflows using generative neural networks.

multiPGS_py is a fast, simple and low-memory python method to calculate polygenic scores (PGS/PRS)

R interface to the IEU GWAS database API

Open-source demos hosted on Dash Gallery

Data Apps & Dashboards for Python. No JavaScript Required.

A collection of scripts and examples created while answering questions from the greater Dash community

A curated list of awesome Dash (plotly) resources

Analysis pipelines for genomic sequencing data

Sample contamination/relationship analysis

A cross-platform command-line utility that creates projects from cookiecutters (project templates), e.g. Python package projects, C projects.

EcoTyper is a machine learning framework for large-scale identification of cell states and cellular ecosystems from gene expression data.

A unified interface to immune deconvolution methods (CIBERSORT, EPIC, quanTIseq, TIMER, xCell, MCPcounter) and mouse deconvolution methods

Repo for the R package coloc

🎯 ChIP peak Annotation, Comparison and Visualization

A 'ggplot2' Extension for Consistent Axis Alignment

Useful bash one-liners for bioinformatics.