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maurya-anand/README.md

Hi there!

Thank you very much for checking out my GitHub page!

🎓 About Me

I'm a Bioinformatician and full-stack web developer, experienced in developing and automating next-generation sequencing (NGS) data analysis pipelines. My experience spans various aspects of bioinformatics and web development, including the analysis of clinical whole-exome, whole-genome, and RNA-seq samples.

In my previous roles, I've developed databases containing variant annotations and their allele frequencies across different populations using in-house cohorts. I've also created a real-time dashboard for users to monitor the status of the NGS variant calling pipeline and access QC metrics and other results. Additionally, I've contributed to the development of a novel machine-learning approach that predicts the immunogenicity of a peptide using various features derived from amino-acid composition, HLA-binding, structural features, peptide processing, and peptide transport. My work experience also includes developing scripts and tools for interacting with public databases.

📝 Projects

🛠️ Skills

Bioinformatics

  • WGS, WES and RNA-seq data analysis
  • Somatic and germline variant calling and annotation
  • Data analysis pipeline development and automation

Languages

Perl Bash Python Javascript R MySQL

Workflow management

Nextflow GNU Make GNU Parallel WDL

Web Development

React Django Shiny PHP Bootstrap jQuery Axios Django REST framework Perl CGI Highcharts D3.js Plotly

Version control

Git Subversion

Containerization & Package management

Docker Conda Mamba Pip

Backend as a Service (BaaS)

Render Heroku Firebase

CI/CD

Jenkins Github Actions

Project management

Redmine Github Actions

Pinned Loading

  1. ARA ARA Public

    ARA.v1.6.0

    Perl 8 1

  2. liftover liftover Public

    Convert genomic coordinates from the Human Genome version 19 (hg19) to version 38 (hg38)

    Makefile

  3. perl-utils perl-utils Public

    Perl

  4. covid19live covid19live Public

    JavaScript

  5. react-dictionary react-dictionary Public

    JavaScript

  6. netflix-react netflix-react Public

    netflix clone app

    JavaScript