maximilianh
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maxtools Public
Various command line tools, mostly for bioinformatics, for .tab,.bed,.maf plus various parsers
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seurat Public
Forked from satijalab/seuratR toolkit for single cell genomics
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pubMunch3 Public
various tools to download, convert and process the full text of scientific articles
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cellBrowser Public
main repo: https://github.com/ucscGenomeBrowser/cellBrowser/ - Python pipeline and Javascript scatter plot library for single-cell datasets, http://cellbrowser.rtfd.org
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crispy-doom Public
Forked from fabiangreffrath/crispy-doomCrispy Doom is a limit-removing enhanced-resolution Doom source port based on Chocolate Doom.
C GNU General Public License v2.0 UpdatedDec 31, 2022 -
pubMunch Public
various tools to download, convert and process the full text of scientific articles
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multiSub Public
Prepares a SARS-CoV-2 submission for GISAID, NCBI or ENA. Can read GISAID or NCBI files, or plain fasta+tsv/csv/xls. Finds files in input directory and merges everything into a single output direct…
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CHM13 Public
Forked from marbl/CHM13The complete sequence of a human genome
Other UpdatedApr 5, 2022 -
bioconda-recipes Public
Forked from bioconda/bioconda-recipesConda recipes for the bioconda channel.
Shell UpdatedJan 4, 2022 -
open-data-registry Public
Forked from awslabs/open-data-registryA registry of publicly available datasets on AWS
Python Apache License 2.0 UpdatedDec 8, 2021 -
seurat-wrappers Public
Forked from satijalab/seurat-wrappersCommunity-provided extensions to Seurat
R GNU General Public License v3.0 UpdatedJul 14, 2021 -
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URD Public
Forked from farrellja/URDURD - Reconstruction of Branching Developmental Trajectories
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SARS-CoV-2_Sequencing Public
Forked from CDCgov/SARS-CoV-2_SequencingA collection of sequencing protocols and bioinformatic resources for SARS-CoV-2 sequencing.
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browserInstall Public
An install script for the UCSC Genome Browser
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scanpy Public
Forked from scverse/scanpySingle-Cell Analysis in Python. Scales to >1M cells.
Python BSD 3-Clause "New" or "Revised" License UpdatedDec 1, 2018 -
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intronProspector Public
Forked from diekhans/intronProspectorIdentify putative introns in RNA-Seq alignments
C++ Other UpdatedSep 5, 2018 -
kentUtils Public
Forked from ENCODE-DCC/kentUtilsUCSC command line bioinformatic utilities
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easy-data Public
Forked from czi-hca-comp-tools/easy-dataeasy access to benchmark datasets
MIT License UpdatedApr 26, 2018 -
brca-exchange Public
Forked from BRCAChallenge/brca-exchangeOverall management and deployment of the BRCA Exchange web portal and pipeline scripts
JavaScript UpdatedJul 19, 2017 -
crisporPaper Public
Code for the CRISPOR article, all data and code to create figures and analysis
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knowledger Public
A DCC-like system to submit data and metadata and keep track of submissions
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