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v0.6.0

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Merge pull request OSOceanAcoustics#709 from OSOceanAcoustics/dev

Release/v0.6.0

v0.5.6

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Merge pull request OSOceanAcoustics#560 from OSOceanAcoustics/dev

Release/v0.5.6

v0.5.5

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Bump miniforge version to 4.11.0-0 (OSOceanAcoustics#515)

* Bump miniforge version

* Add step to update mamba to latest

v0.5.4

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Release/v0.5.4 (OSOceanAcoustics#448)

* re-attach sonar_model to combined echodata object (OSOceanAcoustics#437)

* Correct duplicate ping_times during EK60 conversion (fixes OSOceanAcoustics#235) (OSOceanAcoustics#433)

* Add fix for duplicate ping_time

* Remove dead code

* Increment by 1ns instead of 1ms

* Add duplicate ping time warning and store in provenance

* Autoformatter

* Add test for duplicate ping times file

* Add qc method to remove duplicate pings

* Drop entire pings with duplicate values

* Store entire original ping_time and add attribute when there are duplicate ping_times

* Remove duplicate ping_time qc method, it will be added back in future PR

* Change EchoData combine ping_time reversal attribute to netCDF encodable value

* Remove unused import

* Update tests

* Clarify duplicate ping_time removal and drop warnings

* Add removal note to deprecation warnings (OSOceanAcoustics#443)

* Add removal note to deprecation warnings

* Say removal will be specifically in next release

* AD2CP conversion bug fixes (OSOceanAcoustics#438)

* Allow strings in AD2CP config string data record

* Add ping_time dimension to ahrs variables

* Default AHRS to empty list instead of None

* Change AHRS dims when it does not exist

* Add update_platform method to EchoData (OSOceanAcoustics#434)

* Add update_platform method to EchoData

* Add test for update_platform

* Use drop_vars instead of drop

* Use .data on variables

* Generalize extra_platform_data time dimension name

* Add AZFP support

* Generalized update_platform handling of CF trajectory-encoded datasets

* [pre-commit.ci] auto fixes from pre-commit.com hooks

for more information, see https://pre-commit.ci

* Default water_level to zeros instead of ones

* Add warning for overwritten variables

* Index incoming data by time2

* Add long_name for time2

* Show dropped variable warning when nans do not exist

* Reword dropped variable warning

* Rename mapping_get_multiple to mapping_search_variable

Co-authored-by: Emilio Mayorga <[email protected]>
Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>

* Add summary statistics (OSOceanAcoustics#444)

* initial add of echo metrics functions

* update echo metrics to use range as data variable

* small readability edit

* added test functions to echopype.tests

* Modified syntax for consistency

* lint corrections on metrics

* added docstrings

* changed summary_statistics.py docstrings to numpy format

* Clean up tabs in code

* Clean up tabs in test code

* add metrics to run-test.py

* renamed test_metrics_summary_statistics

* small debug edits

* pre commit black edits

* moved test_metrics_summary_statistics.py to /tests/metrics/

* docstring update, add typing, change inertia to dispersion

* [pre-commit.ci] auto fixes from pre-commit.com hooks

for more information, see https://pre-commit.ci

Co-authored-by: stuara <[email protected]>
Co-authored-by: Landung "Don" Setiawan <[email protected]>
Co-authored-by: stuara <[email protected]>
Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>

* Prepare workflows for master -> main (OSOceanAcoustics#445)

* Add PathNotFoundError in _load_convert for open_converted (OSOceanAcoustics#447)

* add PathNotFoundError in _load_convert for open_converted

Co-authored-by: imranmaj <[email protected]>
Co-authored-by: Emilio Mayorga <[email protected]>
Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
Co-authored-by: stuara <[email protected]>
Co-authored-by: Landung "Don" Setiawan <[email protected]>
Co-authored-by: stuara <[email protected]>
Co-authored-by: Landung "Don" Setiawan <[email protected]>

v0.5.3

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Merge pull request OSOceanAcoustics#432 from OSOceanAcoustics/release…

…/v0.5.3

Release/v0.5.3

v0.5.2

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Merge pull request OSOceanAcoustics#398 from OSOceanAcoustics/release…

…/v0.5.2

Adding commits for release/v0.5.2

v0.5.1

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Merge pull request OSOceanAcoustics#386 from OSOceanAcoustics/release…

…/0.5.1

Merge branch release/0.5.1 to master.

v0.5.0

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Small fixes to docs before v0.5.0 release (OSOceanAcoustics#354)

* revert addition of .ad2cp conversion

* add .ad2cp parsing back, fix refs of Sv to ds_Sv

v0.4.1

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Merge pull request OSOceanAcoustics#200 from leewujung/doc-update

Update README and documentation

v0.4.0

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Merge pull request OSOceanAcoustics#170 from leewujung/doc-minor-change

Minor change to docs: 
- add @lsetiawan to contributor list
- update intro text