mbhall88
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open-data-registry Public
Forked from awslabs/open-data-registryA registry of publicly available datasets on AWS
Python Apache License 2.0 UpdatedFeb 6, 2025 -
bioconda-recipes Public
Forked from bioconda/bioconda-recipesConda recipes for the bioconda channel.
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NanoVarBench Public
Evaluating Nanopore-based bacterial variant calling
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lrge Public
Genome size estimation from long read overlaps
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AllTheBacteria Public
Forked from AllTheBacteria/AllTheBacteriaFollow up to Grace Blackwell's 661k dataset, for 2023
Python MIT License UpdatedDec 4, 2024 -
20241205-uqccr-symposium Public
Slides for my presentation at the 2024 UQCCR Infectious Diseases Theme Showcase
JavaScript MIT License UpdatedDec 3, 2024 -
rasusa Public
Randomly subsample sequencing reads or alignments
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bioconda-utils Public
Forked from bioconda/bioconda-utilsUtilities for building and managing bioconda recipes
Python MIT License UpdatedNov 25, 2024 -
bioconda-docs Public
Forked from bioconda/bioconda-docsDocumentation for bioconda
SCSS MIT License UpdatedNov 21, 2024 -
needletail Public
Forked from onecodex/needletailFast FASTX parsing and k-mer methods in Rust
Rust MIT License UpdatedNov 21, 2024 -
bioconda.github.io Public
Forked from bioconda/bioconda.github.ioBioconda is a distribution of bioinformatics software realized as a channel for the versatile package manager Conda.
HTML UpdatedNov 21, 2024 -
minimap2-rs Public
Forked from jguhlin/minimap2-rsRust bindings to minimap2 library
Rust Other UpdatedNov 18, 2024 -
snakemake Public
Forked from snakemake/snakemakeThis is the development home of the workflow management system Snakemake. For general information, see
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rust-script-feedstock Public
Forked from conda-forge/rust-script-feedstockA conda-smithy repository for rust-script.
BSD 3-Clause "New" or "Revised" License UpdatedNov 13, 2024 -
statannotations-feedstock Public
Forked from conda-forge/statannotations-feedstockA conda-smithy repository for statannotations.
BSD 3-Clause "New" or "Revised" License UpdatedNov 6, 2024 -
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pysam Public
Forked from pysam-developers/pysamPysam is a Python package for reading, manipulating, and writing genomics data such as SAM/BAM/CRAM and VCF/BCF files. It's a lightweight wrapper of the HTSlib API, the same one that powers samtool…
Cython MIT License UpdatedOct 10, 2024 -
nohuman Public
Remove human reads from a sequencing run
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fastq-dl Public
Forked from rpetit3/fastq-dlDownload FASTQ files from SRA or ENA repositories.
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cf-scripts Public
Forked from regro/cf-scriptsFlagship repo for cf-regro-autotick-bot
Python Other UpdatedSep 26, 2024 -
compression_benchmark Public
Benchmarking FASTQ compression with 'mature' compression algorithms
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ssubmit-feedstock Public
Forked from conda-forge/ssubmit-feedstockA conda-smithy repository for ssubmit.
Shell BSD 3-Clause "New" or "Revised" License UpdatedSep 19, 2024 -
psdm Public
Compute a pairwise SNP distance matrix from one or two alignment(s)
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ssubmit Public
Submit slurm sbatch jobs without a script
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ontime Public
Extract subsets of ONT (Nanopore) reads based on time
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container_recipes Public
Repository with all my container recipes 👩🍳
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noodles Public
Forked from zaeleus/noodlesBioinformatics I/O libraries in Rust
Rust MIT License UpdatedAug 26, 2024 -
staged-recipes Public
Forked from conda-forge/staged-recipesA place to submit conda recipes before they become fully fledged conda-forge feedstocks
Python BSD 3-Clause "New" or "Revised" License UpdatedAug 22, 2024 -
rust Public
Forked from rust-lang/rustEmpowering everyone to build reliable and efficient software.