The integrated Sequentially Markovian Coalescent

Phylogenetic orthology inference for comparative genomics

A fast multi-threaded k-mer counter

What I install and configure when I get a new machine.

An introduction to Bayesian data analysis

Hugo backend to my personal site, CV, and blog

class materials for MCB517A through UW/Fred Hutch

SDS 366 Data Visualization

Recombination Landscape Estimation using Recurrent Neural Networks

Rapid analysis and visualization of coronavirus genome variation

ggplot2-style plots with base R graphics

[mu]tation [s]pectrum [h]istory [i]nference

Linking influenza virus evolution within and between human hosts

Bayesian Evolutionary Analysis Sampling Trees

Bayesian Evolutionary Analysis by Sampling Trees

Code from Lin et al., "The number and pattern of viral genomic reassortments are not necessarily identifiable from segment trees", 2024; msae078.

pomp in Julia

Single cell current best practices tutorial case study for the paper:Luecken and Theis, "Current best practices in single-cell RNA-seq analysis: a tutorial"

Data and code behind the articles and graphics at FiveThirtyEight

Tools for Analyzing Finite Mixture Models

Data on COVID-19 (coronavirus) cases, deaths, hospitalizations, tests • All countries • Updated daily by Our World in Data

Teaching materials for MCMC I module in the Summer Institute in Statistics and Modeling in Infectious Diseases (SISMID)

Call LLM APIs from R

R & stats illustrations by @allison_horst

Abstract types and methods for Gaussian Processes.

🎣 An R package for data extraction and analysis of groundfish data from the IPHC Longline Survey in British Columbia

Fit and forecast from Larkin and Ricker stock-recruitment models

State-space, age-structured fish stock assessment model

Symbolic programming for the next generation of numerical software