dpu

The Data Processing Module (DPU) portion of the eVOLVER code are Python scripts used to interface with the machine. This is where experimental scripts can be written, feedback loops between parameters can be programmed, or calibration files can be updated on eVOLVER.

Run experimental scripts code for eVOLVER

Mac

python3.6 experiment/your_exptdir/main_eVOLVER.py

Windows

py experiment/your_exptdir/main_eVOLVER.py

Start graphing tool for eVOLVER. Start in new Terminal.

NOTE: Experiment name must have 'expt' to get properly graphed.

Mac

python3.6 graphing/src/manage.py runserver

Windows

py graphing/src/manage.py runserver

See plots locally on http://127.0.0.1:8000

Setup before running eVOLVER for the first time

Mac

Install Homebrew and Python 3.6

/usr/bin/ruby -e "$(curl -fsSL https://raw.githubusercontent.com/Homebrew/install/master/install)"

brew install --ignore-dependencies https://raw.githubusercontent.com/Homebrew/homebrew-core/f2a764ef944b1080be64bd88dca9a1d80130c558/Formula/python.rb

brew install openssl
brew install sqlite

Windows

Install from https://www.python.org/downloads/release/python-368/

Install Dependencies

Mac

python3.6 setup.py install

Windows

py setup.py install

Run calibration code (after the raw values have been logged on the eVOLVER)

List raw temperature JSON files logged on evolver

Mac

python3.6 calibration/calibrate.py -t -a 192.168.1.2 -g

Windows

py calibration/calibrate.py -t -a 192.168.1.2 -g

Choose temperature raw data file to update calibration with

Mac

python3.6 calibration/calibrate.py -t -a 192.168.1.2 -f 'Temp-2019-03-19 06:20:58.json'

Windows

py calibration/calibrate.py -t -a 192.168.1.2 -f 'Temp-2019-03-19 06:20:58.json'

List raw OD JSON files logged on evolver

Mac

python3.6 calibration/calibrate.py -o -a 192.168.1.2 -g 

Windows

py calibration/calibrate.py -o -a 192.168.1.2 -g 

Choose OD raw data file to update calibration with (3D, necessary for algal growth module)

python3.6 calibration/calibrate.py -o -a 192.168.1.2 -f <filename> 

Windows

py calibration/calibrate.py -o -a 192.168.1.2 -f <filename>