Code described in publication:

Tan, M.H., Gan, H.M., Schultz, M.B. and Austin, C.M., 2015. MitoPhAST, a new automated mitogenomic phylogeny tool in the post-genomic era with a case study of 89 decapod mitogenomes including eight new freshwater crayfish mitogenomes. Molecular Phylogenetics and Evolution, 85, pp.180-188. https://doi.org/10.1016/j.ympev.2015.02.009