Kun-peng: an ultra-fast, low-memory footprint and accurate taxonomy classifier for all

An extremely fast Python package and project manager, written in Rust.

A Practical and Efficient NCBI Taxonomy Toolkit, also supports creating NCBI-style taxdump files for custom taxonomies like GTDB/ICTV

Unleash the full power of your k-mers!

Tidy Plots for Scientific Papers

Generate basic stats for an assembly.

Maximum likelihood inference of time stamped phylogenies and ancestral reconstruction

A 'ggplot2' Extension for Consistent Axis Alignment

sensitive and precise assembly of short sequencing reads

MetaMDBG: a lightweight assembler for long and accurate metagenomics reads.

R package for genome size prediction

Code and data for Williams, Zipkin & Brodie 2024 (Nature Communications)

Bioinformatics tool for Locus Visualisation

colorblind friendly color palettes and ggplot2 graphic system extensions for publication-quality scientific figures

Package management made easy

Snakemake Pipeline to check the requirements for a prokaryotic assembly to be included in the SeqCode initiative

LexicMap: efficient sequence alignment against millions of prokaryotic genomes

Bin Chicken - recovery of low abundance and taxonomically targeted metagenome assembled genomes (MAGs) through strategic coassembly

Melon: metagenomic long-read-based taxonomic identification and quantification using marker genes

Metapresence is a Python tool to calculate metrics to assess the evenness of the coverage distribution on DNA sequences, in order to infer their presence in a given sample.

This is a repository for CAMPER.

MICROPHERRET: MICRObial PHEnotypic tRait ClassifieR using machine lEarning Techniques

BEAV: Bacterial Element Annotation reVamped

A modern resume template written in Typst, inspired by Awesome-CV