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⚡ TabPFN: Foundation Model for Tabular Data ⚡

Python 2,304 186 Updated Jan 25, 2025

Command line csv viewer

Rust 2,716 46 Updated Jan 18, 2025

R package to infer biological activities from omics data using a collection of methods.

R 219 24 Updated Oct 19, 2024

gmx_corr converts the covariance matrix which is produced by GROMACS covar to cross correlation matrix and creates a heat map figure.

Jupyter Notebook 7 7 Updated Oct 11, 2022
Python 8 2 Updated Sep 3, 2024

Code for running RFdiffusion

Python 1,920 372 Updated Aug 26, 2024
Jupyter Notebook 1 Updated Sep 29, 2023

AlphaFold 3 inference pipeline.

Python 5,915 714 Updated Jan 23, 2025

Python library for array programming on biological datasets. Documentation available at: https://bionumpy.github.io/bionumpy/

Python 280 16 Updated Jan 26, 2025

A beautiful, simple, clean, and responsive Jekyll theme for academics

HTML 11,968 11,499 Updated Jan 26, 2025

A modular graph-based Retrieval-Augmented Generation (RAG) system

Python 21,920 2,168 Updated Jan 24, 2025

Package management made easy

Rust 3,763 212 Updated Jan 26, 2025

A toolset and pipeline for running zero shot and supervised protein fitness prediction, drop in compatible with scikitlearn

Jupyter Notebook 10 2 Updated Jan 23, 2025

An open-source, low-code machine learning library in Python

Jupyter Notebook 9,096 1,787 Updated Jan 16, 2025

Drag’n’drop Pivot Tables and Charts for Jupyter/IPython Notebook, care of PivotTable.js

Python 694 88 Updated Mar 15, 2024

pyforest - feel the bliss of automated imports

Python 1,109 196 Updated Jul 16, 2024

Automatically visualize your pandas dataframe via a single print! 📊 💡

Python 5,244 370 Updated Mar 20, 2024

Lazy Predict help build a lot of basic models without much code and helps understand which models works better without any parameter tuning

Python 3,077 351 Updated Nov 4, 2024

The standard data-centric AI package for data quality and machine learning with messy, real-world data and labels.

Python 10,104 792 Updated Jan 11, 2025

A new markup-based typesetting system that is powerful and easy to learn.

Rust 36,994 1,001 Updated Jan 24, 2025

A Unified Approach to Protein Engineering

Jupyter Notebook 41 7 Updated Jul 2, 2024

Neural relational inference for molecular dynamics simulations

Python 55 23 Updated May 30, 2023

Sandbox for Deep-Learning based Computational Protein Design

Python 108 8 Updated Jan 16, 2025

Friends don't let friends make certain types of data visualization - What are they and why are they bad.

R 6,539 255 Updated Dec 10, 2024

"Cyberpunk style" for matplotlib plots

Python 1,725 73 Updated Nov 28, 2024

😸 Soothing pastel theme for the high-spirited!

TypeScript 15,769 281 Updated Jan 26, 2025

Predict multiple protein conformations using sequence clustering and AlphaFold2.

Jupyter Notebook 144 22 Updated Sep 10, 2024

PyMOL extension to color AlphaFold structures by confidence (pLDDT).

Python 79 23 Updated Jul 23, 2024

Collection of bioinformatics training materials

Python 998 184 Updated Jan 19, 2025
Python 33 2 Updated May 4, 2024
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