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Version Beta.1.2
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leonardojo committed Sep 13, 2023
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6 changes: 0 additions & 6 deletions README.Rmd
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ggPlantmap is a R tidyverse based package with a series of plant images to be mapped in a ggplot enviroment. We also provide a series of functions and instructions to easily create your own personal ggPlantmap. These ggPlantmap objects can be added into R pipelines for the visual representation of quantitative data in distinct plant cells and/or structures.
<img src="man/figures/ggPlantmap.example1.jpg" align="center" height="250"/>

## Required packages
```{r, eval = FALSE}
library(tidyverse)
library(XML)
```

## Installation

```{r, eval = FALSE}
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ggPm.At.seed.devseries,Arabidopsis thaliana,seed,development series,Diagram of the development of Arabidopsis thaliana seed tissues,"Cells,Tissues and Stage",https://doi.org/10.1073/pnas.1222061110,Leonardo Jo,[email protected]
ggPm.At.earlyembryogenesis.devseries,Arabidopsis thaliana,embryo,development series,Diagram of the development of Arabidopsis thaliana embryos,"Cells, Ontogeny and Stage",https://doi.org/10.1111/nph.12267,Leonardo Jo,[email protected]
ggPm.At.shootapex.longitudinal,Arabidopsis thaliana,shoot apical meristem,longitudinal,Diagram of the Arabidopsis thaliana shoot apical meristem,Layers and Zone,https://doi.org/10.1007/s10265-020-01174-3,Leonardo Jo,[email protected]
ggPm.At.inflorescencestem.crossection,Arabidopsis thaliana,inflorescence stem,cross-section,Cross-section of Arabidopsis thaliana inflorescence stem,Cells,https://academic.oup.com/plcell/article/33/2/200/6017181,Leonardo Jo,[email protected]
ggPm.Sl.root.crossection,Solanum lycopersicum,root,cross-section,Cross-section of Solanum lycopersicum (Tomato) root,Cells,https://doi.org/10.1016/j.cell.2021.04.024,Leonardo Jo,[email protected]
ggPm.At.inflorescencestem.crosssection,Arabidopsis thaliana,inflorescence stem,cross-section,Cross-section of Arabidopsis thaliana inflorescence stem,Cells,https://academic.oup.com/plcell/article/33/2/200/6017181,Leonardo Jo,[email protected]
ggPm.Sl.root.crosssection,Solanum lycopersicum,root,cross-section,Cross-section of Solanum lycopersicum (Tomato) root,Cells,https://doi.org/10.1016/j.cell.2021.04.024,Leonardo Jo,[email protected]
ggPm.At.leaf.topview,Arabidopsis thaliana,leaf,top view,Top view of Arabidopsis thaliana leaves from left to right in order of emergence from the SAM.,Leaves,http://doi.org/10.1199/tab.0181,Leonardo Jo,[email protected]
ggPm.At.rootelong.longitudinal,Arabidopsis thaliana,root elongation zone,longitudinal,Longitudinal view of Arabidopsis thaliana root at the elongation zone,Cells,https://doi.org/10.1016/j.devcel.2022.01.008,Leonardo Jo,[email protected]
ggPm.At.rootmatur.crosssection,Arabidopsis thaliana,root maturation zone,cross-section,Cross-section of Arabidopsis thaliana root at the maturation zone,Cells,https://doi.org/10.1016/j.devcel.2022.01.008,Leonardo Jo,[email protected]
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