Full stack data scientist & computational biologist
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Biobot Analytics
- Boston, MA
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manta-hic Public
Deep learning network & utilities for predicting Hi-C data from sequence
Python Apache License 2.0 UpdatedDec 9, 2024 -
polychrom Public
Forked from open2c/polychromA draft of a new version of openmm-polymer
Python MIT License UpdatedMar 13, 2022 -
covid19-wastewater-data Public
Data repository for Biobot Analytics Nationwide Wastewater Monitoring Network
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cooltools Public
Forked from open2c/cooltoolsThe tools for your .cool's
Python MIT License UpdatedMar 30, 2021 -
cooler Public
Forked from open2c/coolerA cool place to store your Hi-C
Python BSD 3-Clause "New" or "Revised" License UpdatedJan 5, 2021 -
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MultiQC Public
Forked from open2c/MultiQCAggregate results from bioinformatics analyses across many samples into a single report.
Python GNU General Public License v3.0 UpdatedOct 22, 2020 -
bioframe Public
Forked from open2c/bioframePandas utilities for tab-delimited and other genomic data files
Python MIT License UpdatedJul 2, 2020 -
cont3d Public
Forked from mirnylab/cont3dUtilities for working with 3-point contact matrices
Python UpdatedApr 10, 2020 -
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promoter_mapper Public
Mapper for disjoint bacterial promoters