forked from nf-core/configs
-
Notifications
You must be signed in to change notification settings - Fork 0
Commit
This commit does not belong to any branch on this repository, and may belong to a fork outside of the repository.
- Loading branch information
1 parent
cc217f2
commit 47f227c
Showing
1 changed file
with
15 additions
and
0 deletions.
There are no files selected for viewing
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Original file line number | Diff line number | Diff line change |
---|---|---|
@@ -0,0 +1,15 @@ | ||
# nf-core/configs: NYU HPC Configuration | ||
|
||
All nf-core pipelines have been successfully configured for use on the HPC Cluster at New York University. | ||
|
||
To use, run the pipeline with `-profile nyu_hpc`. This will download and launch the [`profile.config`](../conf/profile.config) which has been pre-configured with a setup suitable for the NYU HPC cluster. Using this profile, a docker image containing all of the required software will be downloaded, and converted to a Singularity image before execution of the pipeline. | ||
|
||
## Below are non-mandatory information e.g. on modules to load etc | ||
|
||
Before running the pipeline you will need to load Nextflow and Singularity using the environment module system on PROFILE CLUSTER. You can do this by issuing the commands below: | ||
|
||
```bash | ||
## Load Nextflow modules | ||
module purge | ||
module load nextflow/23.04.1 | ||
``` |