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  • Wellcome Sanger Institute - previously DKFZ & Stanford University
  • Cambridge, UK

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  1. mtDNA_pipeline mtDNA_pipeline Public

    Calling somatic mutations in mitochondrial DNA from relapsed/refractory multiple myeloma patients

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  2. master_thesis master_thesis Public

    This repository is providing the analysis scripts for the master thesis entitled "Modelling tumorigenesis in vitro using tissue-derived gastric organoids"

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  3. sccaf sccaf Public

    Forked from SCCAF/sccaf

    Single-Cell Clustering Assessment Framework

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  4. mtdna_bloodPhylogenies mtdna_bloodPhylogenies Public

    Repository for the documentation of the analysis perforrmed in my rotation report "Mitochondrial variation in large somatic phylogenies from blood".

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  5. rnaseq rnaseq Public

    Forked from nf-core/rnaseq

    RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.

    Nextflow

  6. methylseq methylseq Public

    Forked from nf-core/methylseq

    Methylation (Bisulfite-Sequencing) analysis pipeline using Bismark or bwa-meth + MethylDackel

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