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@mnielLab

Professor Morten Nielsen's Immunoinformatics and Machine Learning Lab at DTU Bioinformatics

The core research of the group deals with the development of novel and advanced data-driven prediction methods for pattern recognition in biological systems

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  1. NetTCR-2.0 NetTCR-2.0 Public

    NetTCR-2.0. Sequence-based prediction of peptide-TCR binding

    Python 33 11

  2. NetMHCphosPan-1.0 NetMHCphosPan-1.0 Public

    TeX

Repositories

Showing 10 of 14 repositories
  • AbEpiTope-1.0 Public

    AbEpiTope-1.0 is a computational tool that features two scores: AbEpiScore-1.0, designed for assessing the accuracy of modelled AbAg interfaces, and AbEpiTarget-1.0, optimised for selecting the antibody most likely to bind a given antigen.

    mnielLab/AbEpiTope-1.0’s past year of commit activity
    Python 3 0 0 0 Updated Dec 10, 2024
  • esm2_utilities Public

    Installation guide with a little utilization code for protein language model ESM2

    mnielLab/esm2_utilities’s past year of commit activity
    Python 0 0 0 0 Updated Nov 19, 2024
  • abepitope_exampledata Public

    Example data for AbEpiTope-1.0

    mnielLab/abepitope_exampledata’s past year of commit activity
    0 0 0 0 Updated Oct 12, 2024
  • 22125_algobio_nn Public

    Repository for the neural networks part of (22125) Algorithms in Bioinformatics

    mnielLab/22125_algobio_nn’s past year of commit activity
    Jupyter Notebook 0 MIT 0 0 0 Updated Jun 12, 2024
  • NetTCR-2.2 Public

    Sequence-based prediction of peptide-TCR interactions using paired chain data

    mnielLab/NetTCR-2.2’s past year of commit activity
    Python 7 5 1 0 Updated Mar 27, 2024
  • NetTCR-IMMREP-2023 Public

    NetTCR entries for the IMMREP 2023 kaggle competition

    mnielLab/NetTCR-IMMREP-2023’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Dec 20, 2023
  • NetTCR-2.1 Public

    This repo contains the code to train and test NetTCR-2.1 models

    mnielLab/NetTCR-2.1’s past year of commit activity
    Python 1 0 0 0 Updated Aug 23, 2023
  • ITRAP_benchmark Public

    This repo contains the 10x Genomic datasets filtered using ATRAP and ICON denoising frameworks.

    mnielLab/ITRAP_benchmark’s past year of commit activity
    1 0 0 0 Updated Jul 11, 2023
  • itrap Public

    Improved T-cell Receptor Antigen Pairing

    mnielLab/itrap’s past year of commit activity
    Python 3 0 0 0 Updated May 5, 2023
  • Master_MFJ Public

    This repository contains the model architectures and code used for training the models in the Master thesis by Mathias Fynbo Jensen

    mnielLab/Master_MFJ’s past year of commit activity
    Python 0 0 0 0 Updated Mar 6, 2023
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