Version 1.1.0
- Breaking: the default aa substitution model for RAxML changed from WAG to AUTO.
This has an impact on performance (it is faster to set this parameter to a fixed value).
To get the same behaviour as in earlier versions pass--raxml-aa-substitution-model=WAG
- Add parameter
--raxml-aa-substitution-model
(#29) - Add HMMs of UBCG (#25)