Code for "Leveraging Probabilistic Segmentation Models for Improved Glaucoma Diagnosis: A Clinical Pipeline Approach" MIDL 2024

Config files for my GitHub profile.

Flexpilot - Open-Source, Native and a True GitHub Copilot Alternative for VS Code

3D Slicer module for planning mandible reconstruction surgery using fibula flap

Brainchop: In-browser 3D MRI rendering and segmentation

3D Slicer extension for Segment Anything Model (SAM) developed by Meta

This is a repo for the vertebral analyzer

Marching cubes (and related tools) for Python

Some simple Blender scripts for rendering paper figures

Machine Learning Engineering Open Book

The official GitHub repository for the Radiologist-in-the-Loop AI tutorial at MICCAI 2023!

Perspective Projection-Based 3D CT Reconstruction from Biplanar X-rays (ICASSP 2023, Best Student Paper Awards)

automatic oral disease diagnosis in smartphone-based images

Library and executables for modeling and registration applications in medical image analysis. Particular emphasis on intraoperative fluoroscopic (X-ray) navigation via 2D/3D registration.

Toolbox for Differential Geometry on Triangle and Tetrahedra Meshes (FEM, Laplace, Poisson, Heat Flow ...)

Discrete Laplace Beltrami Operator (LBO) and related applications

A python implementation to extract Shape DNA [1] of triangle surface meshes

plane manipulation in python

Code for the registration component of the IPCAI 2020 paper: "Automatic Annotation of Hip Anatomy in Fluoroscopy for Robust and Efficient 2D/3D Registration." https://arxiv.org/abs/1911.07042 or ht…

A lightweight neural network for multi-view classification and reconstruction.

Implementations of recent research prototypes/demonstrations using MONAI.

Deep Learning and Differentiable Programming

Geometric morphometrics in non-Euclidean shape spaces.