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Out of distribution data detection for antimicrobial resistance detection

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.ipynb_checkpoints
.ipynb_checkpoints
 
 
load_files
load_files
 
 
README.md
README.md
 
 
X_test_ar_whole.pkl
X_test_ar_whole.pkl
 
 
X_train_ar_whole_pkl.zip
X_train_ar_whole_pkl.zip
 
 
X_val_ar_whole.pkl
X_val_ar_whole.pkl
 
 
normalRNN_ab_res_ADAM.py
normalRNN_ab_res_ADAM.py
 
 
pSGLD.py
pSGLD.py
 
 
pSGLD_antibiotic_res_attention_vis.ipynb
pSGLD_antibiotic_res_attention_vis.ipynb
 
 
psgld_rnn_with_att_ab_res_0.375431_acc_96.311475_cyclical.pkl
psgld_rnn_with_att_ab_res_0.375431_acc_96.311475_cyclical.pkl
 
 
rnn_with_attention_whole_ab_resistance_model_adam.pkl
rnn_with_attention_whole_ab_resistance_model_adam.pkl
 
 
y_test_ar_whole.pkl
y_test_ar_whole.pkl
 
 
y_train_ar_whole.pkl
y_train_ar_whole.pkl
 
 
y_val_ar_whole.pkl
y_val_ar_whole.pkl
 
 

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This repository includes all code and files for our paper

Md-Nafiz Hamid, Iddo Friedberg; Self-Attention based model for de-novo antibiotic resistant gene classification with enhanced reliability for out of distribution data detection, BioRxiv, 543272, https://www.biorxiv.org/content/10.1101/543272v1.abstract

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Out of distribution data detection for antimicrobial resistance detection

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