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Showing results

Stochastic trace estimation using JAX

Python 14 3 Updated Mar 27, 2025

The most comprehensive authentication framework for TypeScript

TypeScript 11,953 796 Updated Apr 24, 2025

This repository provides a Python script to fetch and summarize research papers from arXiv using the free Gemini API

Python 152 24 Updated Mar 5, 2025

A lightweight data processing framework built on DuckDB and 3FS.

Python 4,579 406 Updated Mar 5, 2025

Advanced Statistical Computing at Vanderbilt University Medical Center's Department of Biostatistics

Jupyter Notebook 541 357 Updated Oct 19, 2022

Examples of PyMC models, including a library of Jupyter notebooks.

Python 319 269 Updated Apr 21, 2025

Tutorial on large language models for genomics

218 46 Updated Mar 5, 2025

Project template for STAT-4830

Jupyter Notebook 5 16 Updated Apr 13, 2025

Flexible, scalable, QTL analyses using generalized linear models implemented in JAX

Jupyter Notebook 4 Updated Apr 23, 2025

A growing collection of bioinformatics tutorials, project guides, tools, and articles I’ve developed to make bioinformatics more accessible.

212 45 Updated Apr 15, 2025

DeepSeek LLM: Let there be answers

Makefile 6,326 981 Updated Feb 4, 2024

Python code for resource competition and growth modelling in E.coli

Jupyter Notebook 2 Updated Jul 19, 2024

PM520 Advanced Statistical Computing

Jupyter Notebook 14 2 Updated Apr 18, 2025

Tidy Plots for Scientific Papers

R 545 20 Updated Apr 24, 2025

AlphaFold 3 inference pipeline.

Python 6,392 800 Updated Apr 14, 2025

SurfDock is a Surface-Informed Diffusion Generative Model for Reliable and Accurate Protein-ligand Complex Prediction

Python 171 10 Updated Mar 19, 2025

Development repository for the Triton language and compiler

MLIR 15,334 1,945 Updated Apr 24, 2025

Quick access to the Textual demo

Python 80 2 Updated Dec 12, 2024

R package with collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.

R 249 24 Updated Apr 16, 2025

scplotter is an R package that is built upon plotthis. It provides a set of functions to visualize single-cell sequencing data in an easy and efficient way.

R 146 17 Updated Apr 13, 2025

plotthis is an R package that is built upon ggplot2 and other plotting packages.

R 45 5 Updated Apr 18, 2025

Materials for Genomics Data Science: Introduction to Bioconductor

HTML 94 80 Updated Jul 16, 2024

A highly performant e-commerce template using Next.js

TypeScript 4,157 526 Updated Feb 27, 2025

Listing of papers about machine learning for proteins.

1,601 213 Updated May 31, 2024

Useful functions to make your scRNA-seq plot more cool!

R 331 30 Updated Jan 18, 2025

Course website for Biostat 140.777 in Fall 2024

HTML 3 Updated Dec 10, 2024

viral-ngs: complete pipelines

WDL 62 28 Updated Apr 17, 2025

LIANA: a LIgand-receptor ANalysis frAmework

R 200 34 Updated Aug 7, 2024
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