Data and scripts repository from the manuscript:

Transcriptomic profiling of castes and of sexually and parthenogenetically produced reproductive females in the termite Cavitermes tuberosus
Natalia de Souza Araujo, Simon Hellemans, Yves Roisin and Denis Fournier

Repository content

Annotation

• transcriptome_annotation_2020-Apri_part1.tar.gz, transcriptome_annotation_2020-Apri_part2.tar.gz: files containing C. tuberosus transcriptomic annotation.

Clusters

• analysisI.tsv: List of transcripts IDs included in each cluster resulting from Analysis I
• analysisII.tsv: List of transcripts IDs included in each cluster resulting from Analysis II
• analysisIII.tsv: List of transcripts IDs included in each cluster resulting from Analysis III
• analysisIV.tsv: List of transcripts IDs included in each cluster resulting from Analysis IV
• analysisV.tsv: List of transcripts IDs included in each cluster resulting from Analysis V
• SexualvsPart_combined_C0.txt: List of transcripts IDs commonly downregulated in females form sexual origin (common transcripts from C0 of Analyses IV and V)
• SexualvsPart_combined_C1.txt: List of transcripts IDs commonly downregulated in females form sexual origin (common transcripts from C0 of Analyses IV and V)

UP_DOWN

• UP_DOWN_script.R: Rscript containing the count estimation/ transformation of the aligned reads and the determination of UP and DOWN regulated transcripts
• Female_Alates_DOWN-counts.txt: Counting table of transcripts down regulated in female alates
• Female_Alates_UP-counts.txt: Counting table of transcripts up regulated in female alates
• Female_Aspirants_parthenogenetic_DOWN-counts.txt: Counting table of transcripts down regulated in female spirants from parthenogenetic origin
• Female_Aspirants_parthenogenetic_UP-counts.txtt: Counting table of transcripts up regulated in female spirants from parthenogenetic origin
• Female_Aspirants_sexual_DOWN-counts.txt: Counting table of transcripts down regulated in female spirants from sexual origin
• Female_Aspirants_sexual_UP-counts.txt: Counting table of transcripts up regulated in female spirants from sexual origin
• Male_Alates_DOWN-counts.txt: Counting table of transcripts down regulated in male alates
• Male_Alates_UP-counts.txt: Counting table of transcripts up regulated in male alates
• Neotenic_Queens_p_DOWN-counts.txt: Counting table of transcripts down regulated in neotenic queens
• Neotenic_Queens_p_UP-counts.txt: Counting table of transcripts up regulated in neotenic queens
• Primary_Queens_DOWN-counts.txt: Counting table of transcripts down regulated in primary queens
• Primary_Queens_UP-counts.txt: Counting table of transcripts up regulated in primary queens
• Soldiers_DOWN-counts.txt: Counting table of transcripts down regulated in soldiers
• Soldiers_UP-counts.txt: Counting table of transcripts up regulated in soldiers
• Workers_DOWN-counts.txt: Counting table of transcripts down regulated in workers
• Workers_UP-counts.txt: Counting table of transcripts up regulated in female workers

License

This work is distributed under the GPLv3 license. Reuse of code derived from this repository is permitted under two conditions:

Proper attribution (i.e., citation of the associated publication; see CITATION.cff and above).
Publication of reused scripts on an open-access platform, such as Github.