Fix some subworkflow linting issues (#7408)

nf-core · Jan 31, 2025 · 332fdce · 332fdce
1 parent a19feab
commit 332fdce
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Showing 3 changed files with 6 additions and 4 deletions.
diff --git a/subworkflows/nf-core/bam_dedup_umi/tests/main.nf.test b/subworkflows/nf-core/bam_dedup_umi/tests/main.nf.test
@@ -8,9 +8,9 @@ nextflow_workflow {
     tag "subworkflows"
     tag "subworkflows_nfcore"
     tag "subworkflows/bam_dedup_umi"
-    tag "bam_dedup_stats_samtools_umicollapse"
-    tag "bam_dedup_stats_samtools_umitools"
-    tag "bam_sort_stats_samtools"
+    tag "subworkflows/bam_dedup_stats_samtools_umicollapse"
+    tag "subworkflows/bam_dedup_stats_samtools_umitools"
+    tag "subworkflows/bam_sort_stats_samtools"
     tag "umitools/prepareforrsem"
     tag "samtools/sort"
 
@@ -96,4 +96,4 @@ nextflow_workflow {
             )
         }
     }
-}
+}
diff --git a/subworkflows/nf-core/fastq_qc_trim_filter_setstrandedness/meta.yml b/subworkflows/nf-core/fastq_qc_trim_filter_setstrandedness/meta.yml
@@ -13,6 +13,7 @@ components:
   - samtools/index
   - cat
   - cat/fastq
+  - fq/lint
   - sortmerna
   - fastq_subsample_fq_salmon
   - fastq_fastqc_umitools_trimgalore

diff --git a/subworkflows/nf-core/fastq_qc_trim_filter_setstrandedness/tests/main.nf.test b/subworkflows/nf-core/fastq_qc_trim_filter_setstrandedness/tests/main.nf.test
@@ -13,6 +13,7 @@ nextflow_workflow {
     tag "cat"
     tag "cat/fastq"
     tag "fastqc"
+    tag "fq/lint"
     tag "sortmerna"
     tag "subworkflows/fastq_fastqc_umitools_trimgalore"
     tag "subworkflows/fastq_fastqc_umitools_fastp"